GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to xylK_Tm

Finding the characterized proteins for xylK_Tm (ABC transporter for xylose, ATP binding component xylK) in D-xylose catabolism

Or see clustering for step xylK_Tm

Or see all steps for D-xylose catabolism

Or cluster curated proteins matching a keyword

Definition of xylK_Tm

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 16 other characterized sequences. (Found 16 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for xylK_Tm.)

TC 3.A.1.2.19 / Q9X051 Ribose import ATP-binding protein RbsA 2, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: ABC_tran, ABC_tran
Heteromeric, 523 amino acids: PaperBLAST, CDD, TCDB::Q9X051
48% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

TC 3.A.1.2.20 / G4FGN3 Monosaccharide-transporting ATPase, component of Glucose porter. Also bind xylose (Boucher and Noll 2011). Induced by glucose (Frock et al. 2012). Directly regulated by glucose-responsive regulator GluR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: ABC_tran, ABC_tran
Heteromeric, 494 amino acids: PaperBLAST, CDD, TCDB::G4FGN3
47% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

PS417_11890 Inositol transport system ATP-binding protein from Pseudomonas simiae WCS417
PFams: ABC_tran, ABC_tran
517 amino acids: PaperBLAST, CDD, reanno::WCS417:GFF2332
46% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

b3567 xylose ABC transporter ATP binding subunit (EC 7.5.2.13; EC 7.5.2.10) from Escherichia coli K-12 substr. MG1655
XYLG_ECOLI / P37388 Xylose import ATP-binding protein XylG; EC 7.5.2.10 from Escherichia coli (strain K12)
TC 3.A.1.2.4 / P37388 XylG aka B3567, component of Xylose porter from Escherichia coli
P37388 xylose ABC transporter ATP binding subunit (EC 7.5.2.13) from Escherichia coli (strain K12)
GB|AAC76591.1 D-xylose ABC transporter, ATP-binding protein; EC 3.6.3.17 from Escherichia coli K12
PFams: ABC_tran, ABC_tran
Heteromeric, 513 amino acids: PaperBLAST, CDD, SwissProt::P37388
45% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

AO353_21385 m-Inositol ABC transporter, ATPase component (itaA) from Pseudomonas fluorescens FW300-N2E3
PFams: ABC_tran, ABC_tran
Heteromeric, 521 amino acids: PaperBLAST, CDD, reanno::pseudo3_N2E3:AO353_21385
44% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

b3749 ribose ABC transporter ATP binding subunit from Escherichia coli K-12 substr. MG1655
RBSA_ECOLI / P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12)
TC 3.A.1.2.1 / P04983 RbsA aka B3749, component of Ribose porter from Escherichia coli
P04983 ribose ABC transporter ATP binding subunit from Escherichia coli (strain K12)
GB|AAC76772.1 ribose transport, ATP-binding protein RbsA; EC 3.6.3.17 from Escherichia coli K12
PFams: ABC_tran, ABC_tran
Heteromeric, 501 amino acids: PaperBLAST, CDD, CharProtDB::CH_003578
44% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

TC 3.A.1.2.13 / A6VKS8 RbsA, component of The probable autoinducer-2 (AI-2;, a furanosyl borate diester: 3aS,6S,6aR)-2,2,6,6a-tetrahydroxy-3a-methyltetrahydrofuro[3,2-d][1,3,2]dioxaborolan-2-uide) uptake porter (Shao et al., 2007) (50-70% identical to RbsABC of E. coli; TC# 3.A.1.2.1) from Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
PFams: ABC_tran, ABC_tran
Heteromeric, 500 amino acids: PaperBLAST, CDD, TCDB::A6VKS8
43% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

TC 3.A.1.2.9 / Q7BSH4 RhaT, component of Rhamnose porter (Richardson et al., 2004) (Transport activity is dependent on rhamnokinase (RhaK; AAQ92412) activity (Richardson and Oresnik, 2007) This could be an example of group translocation!) from Rhizobium leguminosarum (biovar trifolii)
PFams: ABC_tran, ABC_tran
Heteromeric, 512 amino acids: PaperBLAST, CDD, TCDB::Q7BSH4
43% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

TC 3.A.1.2.26 / A6LW11 Xylose import ATP-binding protein XylG, component of Xylose transporter, XylFGH (XylF (R), 359 aas; XylG (C), 525 aas; XylH (M), 389 aas from Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
PFams: ABC_tran, ABC_tran
Heteromeric, 525 amino acids: PaperBLAST, CDD, TCDB::A6LW11
43% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

TC 3.A.1.2.21 / B8H229 Inositol transport ATP-binding protein IatA, component of The myoinositol (high affinity)/ D-ribose (low affinity) transporter IatP/IatA/IbpA. The structure of IbpA with myoinositol bound has been solved from Caulobacter crescentus (strain NA1000 / CB15N)
PFams: ABC_tran, ABC_tran
Heteromeric, 515 amino acids: PaperBLAST, CDD, TCDB::B8H229
43% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

TC 3.A.1.2.5 / O05176 GguA aka ATU2347 aka AGR_C_4264, component of Multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter from Agrobacterium radiobacter
PFams: ABC_tran, ABC_tran
Heteromeric, 512 amino acids: PaperBLAST, CDD, TCDB::O05176
42% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

b2149 D-galactose/methyl-galactoside ABC transporter ATP binding subunit from Escherichia coli K-12 substr. MG1655
TC 3.A.1.2.3 / P0AAG8 Galactose/methyl galactoside import ATP-binding protein MglA aka B2149, component of Galactose/glucose (methyl galactoside) porter from Escherichia coli
P0AAG8 D-galactose/methyl-galactoside ABC transporter ATP binding subunit from Escherichia coli (strain K12)
PFams: ABC_tran, ABC_tran
Heteromeric, 506 amino acids: PaperBLAST, CDD, TCDB::P0AAG8
41% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

MGLA_SALTY / P23924 Galactose/methyl galactoside import ATP-binding protein MglA; EC 7.5.2.11 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: ABC_tran, ABC_tran
506 amino acids: PaperBLAST, CDD, SwissProt::P23924
41% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

b4087 D-allose ABC transporter ATP binding subunit (EC 7.5.2.8) from Escherichia coli K-12 substr. MG1655
ALSA_ECOLI / P32721 D-allose import ATP-binding protein AlsA; EC 7.5.2.8 from Escherichia coli (strain K12)
TC 3.A.1.2.6 / P32721 AlsA aka B4087, component of D-allose porter from Escherichia coli
P32721 D-allose ABC transporter ATP binding subunit (EC 7.5.2.8) from Escherichia coli (strain K12)
GB|AAC77048.1 D-allose import ATP-binding protein AlsA; EC 3.6.3.17 from Escherichia coli K12
PFams: ABC_tran, ABC_tran
Heteromeric, 510 amino acids: PaperBLAST, CDD, SwissProt::P32721
40% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

b4485 galactofuranose ABC transporter putative ATP binding subunit (EC 7.5.2.9) from Escherichia coli K-12 substr. MG1655
Q6BEX0 galactofuranose ABC transporter putative ATP binding subunit (EC 7.5.2.9) from Escherichia coli (strain K12)
PFams: ABC_tran, ABC_tran
Heteromeric, 500 amino acids: PaperBLAST, CDD, ecocyc::YTFR-MONOMER
40% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD

b1900 arabinose ABC transporter ATP binding subunit (EC 7.5.2.13; EC 7.5.2.12) from Escherichia coli K-12 substr. MG1655
ARAG_ECOLI / P0AAF3 Arabinose import ATP-binding protein AraG; EC 7.5.2.12 from Escherichia coli (strain K12)
TC 3.A.1.2.2 / P0AAF3 Arabinose import ATP-binding protein AraG aka B1900, component of Arabinose porter from Escherichia coli
P0AAF3 arabinose ABC transporter ATP binding subunit (EC 7.5.2.13) from Escherichia coli (strain K12)
RF|NP_416413.1 L-arabinose ABC transporter, ATP-binding protein AraG; EC 3.6.3.17 from Escherichia coli K12
PFams: ABC_tran, ABC_tran
Heteromeric, 504 amino acids: PaperBLAST, CDD, CharProtDB::CH_014279
41% identical to

Q9WXX0 Ribose import ATP-binding protein RbsA 1 {ECO:0000255|HAMAP-Rule:MF_01716}; EC=7.5.2.7 {ECO:0000255|HAMAP-Rule:MF_01716}
520 amino acids: PaperBLAST, CDD