GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for xylT (D-xylose transporter) in D-xylose catabolism

Or see other characterized proteins similar to xylT

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Definition of xylT

Fetched 13 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 13 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 457-576 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

XYLT_LACBR / O52733 D-xylose transporter; D-xylose-proton symporter from Lactobacillus brevis
TC 2.A.1.1.41 / O52733 The D-xylose:H+ symporter, XylT (Km=220 μM; inhibited competitively by 6-deoxyglucose (Ki=220 μM), but not by other sugars tested) from Lactobacillus brevis
PFams: Sugar_tr, MFS_1, TRI12
457 amino acids: PaperBLAST, CDD, Compare to cluster

HXT4_YEAST / P32467 Low-affinity glucose transporter HXT4; Low-affinity glucose transporter LGT1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TC 2.A.1.1.30 / P32467 Low affinity, constitutive, glucose (hexose; xylose) uniporter, Hxt4 (LGT1; Rag1) (also transports arsenic trioxide [As(OH)3] as do Hxtl, 3, 5, 7 and 9) from Saccharomyces cerevisiae (Baker's yeast)
CH_091400 low-affinity glucose transporter HXT4 from Saccharomyces cerevisiae
PFams: Sugar_tr, MFS_1
576 amino acids: PaperBLAST, CDD, Compare to cluster

STP6_ARATH / Q9SFG0 Sugar transport protein 6; Hexose transporter 6 from Arabidopsis thaliana (Mouse-ear cress)
TC 2.A.1.1.56 / Q9SFG0 High affinity monosaccharide (KM ≈ 20 ┬ÁM):H+ symporter, Stp6 (takes up glucose, 3-O-methylglucose, mannose, fructose, galactose and to a lesser extent, xylose and ribulose. from Arabidopsis thaliana (Mouse-ear cress)
RF|NP_187247.1 sugar transport protein 6 from Arabidopsis thaliana
PFams: Sugar_tr, MFS_1
507 amino acids: PaperBLAST, CDD, Compare to cluster

b4031 D-xylose:H+ symporter from Escherichia coli K-12 substr. MG1655
XYLE_ECOLI / P0AGF4 D-xylose-proton symporter; D-xylose transporter from Escherichia coli (strain K12)
TC 2.A.1.1.3 / P0AGF4 Xylose (xylopyranose):H+ symporter of 491 aas and 12 TMSs from Escherichia coli
P0AGF4 D-xylose:H+ symporter from Escherichia coli (strain K12)
CH_109760 D-xylose-proton symporter from Escherichia coli K12
PFams: Sugar_tr, MFS_1, MFS_1
491 amino acids: PaperBLAST, CDD, Compare to cluster

b2841 arabinose:H+ symporter from Escherichia coli K-12 substr. MG1655
ARAE_ECOLI / P0AE24 Arabinose-proton symporter; Arabinose transporter from Escherichia coli (strain K12)
TC 2.A.1.1.2 / P0AE24 Arabinose (xylose; galactose):H+ symporter, AraE (low affinity high capacity) from Escherichia coli
P0AE24 arabinose:H+ symporter from Escherichia coli (strain K12)
PFams: TRI12, Sugar_tr, MFS_1
472 amino acids: PaperBLAST, CDD, Compare to cluster

ARAE_BACSU / P96710 Arabinose-proton symporter; Arabinose transporter from Bacillus subtilis (strain 168)
TC 2.A.1.1.55 / P96710 L-arabinose:proton symporter, AraE (Sa-Nogueira and Ramos, 1997). Also transports xylose, galactose and α-1,5 arabinobiose from Bacillus subtilis
PFams: Sugar_tr, MFS_1, MFS_1
464 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.1.1.116 / C4B4V9 Arabinose/xylose transporter, AraE from Corynebacterium glutamicum
PFams: Sugar_tr, MFS_1, MFS_2, MFS_1
479 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.1.1.103 / Q0WWW9 D-xylose-proton symporter-like 3, chloroplastic from Arabidopsis thaliana
PFams: Sugar_tr, MFS_1, MFS_5
558 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.1.1.67 / Q2MDH1 Glucose/xylose facilitator-1, GXF1 (functions by sugar uniport; low affinity from Candida intermedia
PFams: Sugar_tr, MFS_1
547 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.1.1.51 / Q2MEV7 Glucose/xylose: H+ symporter, Gsx1 from Candida intermedia
PFams: Sugar_tr, MFS_1
522 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.1.1.40 / Q64L87 The xylose facilitator, Xylhp from Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
PFams: Sugar_tr, MFS_1
525 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.1.1.75 / Q9XIH7 The fructose/xylose:H+ symporter, PMT1 (polyol monosaccharide transporter-1). Also transports other substrates at lower rates. PMT2 is largely of the same sequence and function. Both are present in pollen and young xylem cells (Klepek et al., 2005). A similar ortholog has been identifed in pollen grains of Petunia hybrida from Arabidopsis thaliana
PFams: Sugar_tr, MFS_1
511 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0H3C6H3 Glucose/fructose transport protein
478 amino acids: PaperBLAST, CDD, Compare to cluster