Alignments for a candidate for argH in Shewanella oneidensis MR-1

Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate 199474 SO0279 argininosuccinate lyase (NCBI ptt file)

Query= ecocyc::ARGSUCCINLYA-MONOMER
         (457 letters)



>FitnessBrowser__MR1:199474
          Length = 455

 Score =  590 bits (1522), Expect = e-173
 Identities = 302/454 (66%), Positives = 353/454 (77%)

Query: 1   MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEE 60
           MALWGGRF       FK FNDSL  DYRL EQD+VGS+AW+ A+ +VG++TA E + L++
Sbjct: 1   MALWGGRFQGETSALFKLFNDSLPVDYRLFEQDVVGSIAWADAIASVGIITATECSDLKK 60

Query: 61  ALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLW 120
           ALN LL +V+  P  IL S AEDIHS+VE  LI KVG LGKKLHTGRSRNDQVATDLKLW
Sbjct: 61  ALNELLVEVKGDPAIILASGAEDIHSFVESALIAKVGDLGKKLHTGRSRNDQVATDLKLW 120

Query: 121 CKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDE 180
           C+   + L+   + L+S L+  A+   DAVMPGYTHLQRAQPVTF HWCLAYVEM+ RD 
Sbjct: 121 CQSEGAALVARLQTLRSELIALAEREFDAVMPGYTHLQRAQPVTFGHWCLAYVEMIERDF 180

Query: 181 SRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLS 240
           SRL DALKR +  PLG GALAGTAY++DR  LA  L FAS T NSLDSVSDRDHV+EL S
Sbjct: 181 SRLTDALKRANTCPLGSGALAGTAYQMDRHALALALNFASPTLNSLDSVSDRDHVVELCS 240

Query: 241 AAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQ 300
            A+I M+HLSR AEDLIFFNTGEAGF+ LSD VTSGSSLMPQKKNPDALELIRGK GRV 
Sbjct: 241 TASISMMHLSRMAEDLIFFNTGEAGFISLSDEVTSGSSLMPQKKNPDALELIRGKTGRVY 300

Query: 301 GALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAA 360
           G+L G++ T+K LPLAYNKDMQEDKEGLFD +D+W  CL MAALVL G+ V RP    AA
Sbjct: 301 GSLVGILTTMKALPLAYNKDMQEDKEGLFDVVDSWAICLDMAALVLSGLVVNRPNALLAA 360

Query: 361 QQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDED 420
           QQGYANATELADYLV+KG+PFREAHH+VG AVV AI +  PLE   L+E + F+ +I++D
Sbjct: 361 QQGYANATELADYLVSKGMPFREAHHVVGVAVVAAIAKKIPLEGFTLAEFKTFADIIEDD 420

Query: 421 VYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQA 454
           VYP L++++CL KR   GG +  QV QAIA  +A
Sbjct: 421 VYPNLTIEACLAKRDVLGGTALTQVKQAIAAKKA 454


Lambda     K      H
   0.318    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 555
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 455
Length adjustment: 33
Effective length of query: 424
Effective length of database: 422
Effective search space:   178928
Effective search space used:   178928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate 199474 SO0279 (argininosuccinate lyase (NCBI ptt file))
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.30204.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30204.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.