Alignments for a candidate for ilvI in Desulfovibrio vulgaris Hildenborough JW710

Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate 206818 DVU1376 acetolactate synthase, large subunit, biosynthetic type (TIGR)

Query= metacyc::MONOMER-18810
         (585 letters)



>FitnessBrowser__DvH:206818
          Length = 563

 Score =  608 bits (1568), Expect = e-178
 Identities = 313/565 (55%), Positives = 401/565 (70%), Gaps = 6/565 (1%)

Query: 18  EMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVHAADGYA 77
           ++ GA+IL+  L +EGV+  +GYPGGAV+ IYDE+ +  +  H+LVRHEQAAVHAADGYA
Sbjct: 2   QLNGAQILLECLKKEGVDVFFGYPGGAVIDIYDEIPRHPELHHVLVRHEQAAVHAADGYA 61

Query: 78  RATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQECDTVGIT 137
           RA+GKVGV LVTSGPG TN VTGIATAY DSIP+V++TG VPT  IG DAFQE D VGIT
Sbjct: 62  RASGKVGVCLVTSGPGATNTVTGIATAYSDSIPVVILTGQVPTPLIGNDAFQEVDIVGIT 121

Query: 138 RPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYEYPKSIDMRS 197
           RP  KHN+LV+DV++LA  +++AF++A TGRPGPV+VD+PKDV +    + +P+ + MRS
Sbjct: 122 RPCTKHNYLVRDVKELATVVRQAFYLARTGRPGPVLVDLPKDVMQAKTDFVWPEDVSMRS 181

Query: 198 YNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLANASDELRQLAALTGHPVTNTLMGL 257
           YNP  K +  QIR+A      AERP ++ GGGVV+++AS+EL   A     PV +TLMGL
Sbjct: 182 YNPTYKPNLNQIRRAADAFFEAERPLLFVGGGVVMSDASEELGWFARTLRIPVASTLMGL 241

Query: 258 GAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFTSQARKIIHI 317
           GAFPG    ++GMLGMHGTY AN A+ N D+++A+GARFDDRV G  + F S+AR IIHI
Sbjct: 242 GAFPGDDPLWLGMLGMHGTYAANKAVNNADLIVAVGARFDDRVTGRLSAFASKAR-IIHI 300

Query: 318 DIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPK--REALAKWWEQIEQWRSVD 375
           DIDP+SI K V+V IP+VG+ +  L   I +I    ++ K    A A+W EQ+  WR   
Sbjct: 301 DIDPTSIRKNVQVGIPVVGDCRQSLAN-IREILVPRLEEKDWGAAHARWLEQLASWRVEQ 359

Query: 376 CLKYDRSSEIIKPQYVVEKIWELTKGDAFICSDVGQHQMWAAQFYKFDEPRRWINSGGLG 435
            L + R    IKPQ V+E+++ +T+GDA I ++VGQ+QMW AQFY F +PR  I SGGLG
Sbjct: 360 PLGFSREGG-IKPQQVIEQLFAITRGDAIITTEVGQNQMWTAQFYTFRKPRTLITSGGLG 418

Query: 436 TMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSLNNGYLGMV 495
           TMG G P A+G + AFP+K VV + G+GSIQM IQEL+T +    PVKI  LNNGYLGMV
Sbjct: 419 TMGYGFPAAIGAQFAFPDKLVVDVAGDGSIQMNIQELATAVCNKLPVKILILNNGYLGMV 478

Query: 496 RQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFRLKDRTVFL 555
           RQWQE+ Y   Y  + MDA PDFVKLAEAYG  G R+ +   +E  LREA         +
Sbjct: 479 RQWQELFYQRNYCSTCMDAQPDFVKLAEAYGAEGYRITEVESLESTLREAL-ASPHPAII 537

Query: 556 DFQTDPTENVWPMVQAGKGISEMLL 580
           D + +  ENV+PMV AG  + EMLL
Sbjct: 538 DVRVEREENVYPMVPAGAALDEMLL 562


Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 896
Number of extensions: 29
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 563
Length adjustment: 36
Effective length of query: 549
Effective length of database: 527
Effective search space:   289323
Effective search space used:   289323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate 206818 DVU1376 (acetolactate synthase, large subunit, biosynthetic type (TIGR))
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.26288.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26288.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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