Align Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 (uncharacterized)
to candidate 208063 DVU2566 diaminopimelate decarboxylase (TIGR)
Query= curated2:O27390 (428 letters) >FitnessBrowser__DvH:208063 Length = 421 Score = 291 bits (745), Expect = 3e-83 Identities = 173/408 (42%), Positives = 242/408 (59%), Gaps = 17/408 (4%) Query: 16 GGADAVELADEYGTPLYVIDEMRIRENYRRLYRAFSGEYSRFQVFYACKANTNLAVMRIL 75 G EL + YG+PLYV E +R+ R + +A S + F+V Y+ KAN+NLA++ I+ Sbjct: 16 GLTSPTELVETYGSPLYVYSEAILRQRCREM-KALSS-HPGFRVNYSAKANSNLALLHII 73 Query: 76 EEEGSGIDAVSPGEIYTALMAGFDPDRILYTGNNVRDDELQFALDSGVRINVDSRSQLLR 135 EEG +DA+SPGE++ L AGF PD+ILY NNV +EL A+ G+ ++VDS SQL Sbjct: 74 REEGLVVDAMSPGELFMNLRAGFSPDKILYVCNNVSAEELGNAVSHGLLVSVDSLSQLDL 133 Query: 136 LSEIAPEGLRISFRVNPLVGAGHHEHCITGGEMSKFGVMEREAPEVYRMAMDLGFEPVGI 195 E+ P G R+ R NP +GAGHH+ +T G+ +KFGV EV + GI Sbjct: 134 YGEVNPGG-RVMVRFNPGIGAGHHKKVVTAGKETKFGVDPASIDEVRTILARHNLTLAGI 192 Query: 196 HAHIGSGILDPEPFMLAVETLMDIAGRVHEATGVEFEFIDFGGGLGIPYTP-EEEP-LDI 253 + HIGS L+PE ++ A L+ +A R + E IDFGGG GIPY + +P LD+ Sbjct: 193 NQHIGSLFLEPESYVEAARFLLTLAERFDDV-----EVIDFGGGFGIPYHKYDNQPRLDL 247 Query: 254 DEFASKITGLFKDKLSEYGLGRPMMCLEPGRYIVGDASYLLTRVNTIKES-YRKFAGVDA 312 ++ L G R +EPGRY+V + LL V+++K + ++ G D Sbjct: 248 TAMGAQFDDLISGWAQRRGY-RGRFLVEPGRYVVAECGLLLGSVHSVKSNGANRYVGTDL 306 Query: 313 GFNTLLRPAMYGSYHHILVAERPLDEPSEKM---DVAGNVCESGDLFARDRQLPEINEGD 369 GFN L RP MY ++H I V R PS+ + V GN+CESGD+ AR+R LP + EGD Sbjct: 307 GFNVLARPVMYDAHHDIEV-YREDGAPSDLLLPQTVVGNICESGDIIARNRPLPPVEEGD 365 Query: 370 VLAIMNAGAYSFSMSSQYNSRPRPAEVLV-REGKVDVVRERETFSDLL 416 +L +++AGAY + MSS YN R RPAEVL+ EG+ +VR RET DL+ Sbjct: 366 ILGVLDAGAYGYVMSSSYNQRMRPAEVLIDLEGRPRLVRRRETLDDLV 413 Lambda K H 0.320 0.140 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 577 Number of extensions: 30 Number of successful extensions: 8 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 428 Length of database: 421 Length adjustment: 32 Effective length of query: 396 Effective length of database: 389 Effective search space: 154044 Effective search space used: 154044 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate 208063 DVU2566 (diaminopimelate decarboxylase (TIGR))
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))
../bin/blast/fastacmd -i /tmp/list.11225.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11225.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.