Alignments for a candidate for leuA in Desulfovibrio vulgaris Hildenborough JW710

Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate 208494 DVU2981 2-isopropylmalate synthase (TIGR)

Query= BRENDA::Q9JZG1
         (517 letters)



>FitnessBrowser__DvH:208494
          Length = 509

 Score =  529 bits (1363), Expect = e-155
 Identities = 273/498 (54%), Positives = 357/498 (71%), Gaps = 3/498 (0%)

Query: 6   RVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNAIAK 65
           R+ IFDTTLRDGEQSPGA M  +EK+R+A QL+ LGVDIIEAGF AASPGDFE+V AIAK
Sbjct: 4   RIRIFDTTLRDGEQSPGATMNIKEKLRLAHQLQTLGVDIIEAGFPAASPGDFESVRAIAK 63

Query: 66  TITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAV 125
           T+   TV  L RA+  DI +A +AV  A   R+HTF+ATSP+HM+YKL+  P +V+    
Sbjct: 64  TVKGMTVAGLCRALPADIDRAWDAVCVAESPRLHTFLATSPVHMQYKLRKTPDEVVRMVD 123

Query: 126 KAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEF 185
            AV+ A  +T +VEFS EDA RS+ DFL  +    IEAGATTINIPDTVGY+ P +    
Sbjct: 124 AAVRHAAGHTSNVEFSAEDASRSDRDFLVRVFTTAIEAGATTINIPDTVGYAQPEEFGAL 183

Query: 186 FRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNASVEE 245
            R +I  TPN  K V+S HCHNDLGL VAN+LAAL+ GARQ E T++G+GERAGNA++EE
Sbjct: 184 VRYVIENTPNAHKAVFSVHCHNDLGLGVANTLAALRAGARQAEVTISGIGERAGNAALEE 243

Query: 246 IVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGIHQDG 305
           +VMAL+ RHD FGL+TGI T Q+ P+ +L+S I G P+  NKAIVGANAF+HESGIHQDG
Sbjct: 244 LVMALRTRHDYFGLDTGIVTEQLYPTCRLLSMIIGQPIPANKAIVGANAFAHESGIHQDG 303

Query: 306 VLKHRETYEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAFARFKE 365
           +LKHRETYEIM+ ES+G     L LGK SGRNA K KL +LG  LE E+ LN  F   K+
Sbjct: 304 MLKHRETYEIMTPESIGRTRTELVLGKHSGRNAVKNKLEELGYRLE-EDQLNTVFDAVKQ 362

Query: 366 LADKKREIFDEDLHALVSDEMGSMNAESYKFISQKIS-TETGEEPRADIVFSIKGEEKRA 424
           LADKK++I DED+ ALV +E+  +  + Y+ ++  +  ++TG  P A +V  + GE  R 
Sbjct: 363 LADKKKQIHDEDVEALVLEEVYRI-PDRYRLVNLSVQCSDTGMPPTAAVVMEVDGETMRH 421

Query: 425 SATGSGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNGQGAD 484
           +  G+GP+DA+F AI  +      L+ YSV A+T GT++QGE +VR+        G+G+ 
Sbjct: 422 AGFGAGPIDAVFNAIAHIVGRTPQLERYSVTAITGGTDAQGEVTVRVRENGGTAVGRGSH 481

Query: 485 TDVLVATAKAYLSALSKL 502
            D+++A+A+AYL+AL++L
Sbjct: 482 PDIIIASARAYLNALNRL 499


Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 651
Number of extensions: 20
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 509
Length adjustment: 35
Effective length of query: 482
Effective length of database: 474
Effective search space:   228468
Effective search space used:   228468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate 208494 DVU2981 (2-isopropylmalate synthase (TIGR))
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.6200.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6200.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.