Alignments for a candidate for hisH in Desulfovibrio vulgaris Hildenborough JW710

Align IGP synthase, amidotransferase subunit (EC 4.3.2.10) (characterized)
to candidate 209219 DVU0285 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (TIGR)

Query= reanno::DvH:209219
         (213 letters)



>FitnessBrowser__DvH:209219
          Length = 213

 Score =  449 bits (1155), Expect = e-131
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 1   MLAILDYKAGNQTSVRRALDHLGIPCVITADPEVIQGAAGVIFPGVGAAGQAMNELVTTG 60
           MLAILDYKAGNQTSVRRALDHLGIPCVITADPEVIQGAAGVIFPGVGAAGQAMNELVTTG
Sbjct: 1   MLAILDYKAGNQTSVRRALDHLGIPCVITADPEVIQGAAGVIFPGVGAAGQAMNELVTTG 60

Query: 61  LDEVLRRQVQAGRPLLGICVGCQIMLDYSQENDTKALGIIPGECRLFNPAWTDEDGAPIR 120
           LDEVLRRQVQAGRPLLGICVGCQIMLDYSQENDTKALGIIPGECRLFNPAWTDEDGAPIR
Sbjct: 61  LDEVLRRQVQAGRPLLGICVGCQIMLDYSQENDTKALGIIPGECRLFNPAWTDEDGAPIR 120

Query: 121 VPHMGWNHIVQRRPCELLKGIEPEAEFYFVHSYYPAPPEEYVIATCTYGAEFCAIHGGPG 180
           VPHMGWNHIVQRRPCELLKGIEPEAEFYFVHSYYPAPPEEYVIATCTYGAEFCAIHGGPG
Sbjct: 121 VPHMGWNHIVQRRPCELLKGIEPEAEFYFVHSYYPAPPEEYVIATCTYGAEFCAIHGGPG 180

Query: 181 LWAVQFHPEKSGRPGLRLLANFHRYCTEAADAQ 213
           LWAVQFHPEKSGRPGLRLLANFHRYCTEAADAQ
Sbjct: 181 LWAVQFHPEKSGRPGLRLLANFHRYCTEAADAQ 213


Lambda     K      H
   0.322    0.141    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 349
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 213
Length adjustment: 22
Effective length of query: 191
Effective length of database: 191
Effective search space:    36481
Effective search space used:    36481
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate 209219 DVU0285 (imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (TIGR))
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.30116.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30116.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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