Alignments for a candidate for thrC in Trichodesmium erythraeum IMS101 Annotated Metagenome-Assembled Genome

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate 2629600857 Ga0074568_112924 L-threonine synthase

Query= BRENDA::O66740
         (352 letters)



>IMG__TrieryIMS101_FD:2629600857
          Length = 371

 Score =  436 bits (1120), Expect = e-127
 Identities = 216/351 (61%), Positives = 277/351 (78%), Gaps = 5/351 (1%)

Query: 4   WQGIIKQYKKYLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFK 63
           W G+I+ Y+ YLPV E TP+V+L EGNTPLI    +A  IG + ++++KY+GLNPTGSFK
Sbjct: 22  WPGLIEAYRSYLPVTEETPVVSLKEGNTPLIPVPAIADKIGRQVEVFVKYDGLNPTGSFK 81

Query: 64  DRGMTLAISKAVEAGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAM 123
           DRGMTLAISKA EAG +AVICASTGNTSA+AAAYA R G+RA+VL+P G VA+GKL+QA+
Sbjct: 82  DRGMTLAISKAKEAGAKAVICASTGNTSAAAAAYALRGGMRAFVLIPDGYVALGKLAQAL 141

Query: 124 IYGAKVLAIQGTFDDALNIVRKIGENFPVEIVNSVNPYRIEGQKTAAFEICDTLGEAPDY 183
           +YGA+VLAI+G FD AL IV+ + + +PV +VNSVNPYR+EGQKT AFE+ DTLG+APD+
Sbjct: 142 LYGAEVLAIKGNFDQALQIVKDVAKKYPVTLVNSVNPYRLEGQKTGAFELVDTLGDAPDW 201

Query: 184 HFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAI 243
             IPVGNAGNITAYW GF  Y++  K  +LP+MMG+QA GAAPIVKGYPI +P+T+A+AI
Sbjct: 202 LCIPVGNAGNITAYWMGFCQYHKSKKCDRLPKMMGFQAAGAAPIVKGYPIAHPETVASAI 261

Query: 244 KIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLV 303
           +IGNP SWK A++A + S G   AV+D EIL AY+L+AS EG+FCEPASAASVAGL+K +
Sbjct: 262 RIGNPASWKKAIEAQKASQGSFTAVTDEEILEAYRLLASNEGIFCEPASAASVAGLLK-I 320

Query: 304 REGFFKGGEVVTCTLTGNGLKDPDTAIKVCEE---PITVPPDFDEVVKVLG 351
           ++   +G ++V C LTG+GLKDPD AIK          + P  + V K++G
Sbjct: 321 KDQVPRGAKIV-CVLTGHGLKDPDVAIKHSHNDHFSQGIEPTTEAVAKIMG 370


Lambda     K      H
   0.317    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 461
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 371
Length adjustment: 29
Effective length of query: 323
Effective length of database: 342
Effective search space:   110466
Effective search space used:   110466
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate 2629600857 Ga0074568_112924 (L-threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.23513.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23513.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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