Alignments for a candidate for thrC in Trichodesmium erythraeum IMS101 Annotated Metagenome-Assembled Genome

Align Threonine synthase; TS; EC 4.2.3.1 (uncharacterized)
to candidate 2629601819 Ga0074568_113886 L-threonine synthase

Query= curated2:Q58860
         (405 letters)



>IMG__TrieryIMS101_FD:2629601819
          Length = 437

 Score =  280 bits (715), Expect = 8e-80
 Identities = 159/402 (39%), Positives = 237/402 (58%), Gaps = 9/402 (2%)

Query: 4   RCIKCGKTYDVDEIIYTCE--CGGLLEIIYDYEEIKDKVSEEKLRKREIGVWRYLEYLPV 61
           RC +CG+ Y + E  + CE  C G LE+ Y+YE++   VS   +      +WRY  +LPV
Sbjct: 22  RCKECGEEYPL-EAKHICEDVCFGPLEVKYNYEKLSQIVSRATIEAGPKSIWRYRHFLPV 80

Query: 62  KDESKIVSLCEGGTPLYRCNNLEKELGIKELYVKNEGAN-PTGSFKDRGMTVGVTRANEL 120
             ++  + +  G TPL +   L + LG+K LY+KN+  N PT SFKDR ++V ++RA EL
Sbjct: 81  VTDN-FIDVGTGMTPLVKSERLARRLGLKNLYIKNDAVNMPTLSFKDRVVSVALSRAREL 139

Query: 121 GVEVVGCASTGNTSASLAAYSARSGKKCIVLLPEGKVALGKLAQAMFYGAKVIQVKGNFD 180
           G   V CASTGN + S AA +A++G +C V +P    A GK+   + Y   ++ VKGN+D
Sbjct: 140 GFSTVSCASTGNLANSTAAIAAKAGLECCVFIPADLEA-GKVLGTLIYNPTLMAVKGNYD 198

Query: 181 DALDMVKQLAKEKLIYLLN-SINPFRLEGQKTIAFEICDQLNWQVPDRVIVPVGNAGNIS 239
               +  ++A       +N ++ P+  EG KT+ FE+ +QL WQ+PD V+ P+ +    +
Sbjct: 199 QVNRLCCEVANSYGWGFVNINLRPYYSEGSKTLGFEVAEQLGWQLPDHVVAPIASGSLYT 258

Query: 240 AIWKGFKEFEITGII-DELPKMTGIQADGAKPIVEAFRKRAKDIIPYKNPETIATAIRIG 298
            I+KGF+EF   G++ D+  + +G QA+G  P+ +AF++    I P K P TIA +I IG
Sbjct: 259 KIYKGFQEFIKVGLVEDKAVRFSGAQAEGCSPVAQAFKEERDFISPVK-PNTIAKSIAIG 317

Query: 299 NPVNAPKALDAIYSSGGYAEAVTDEEIVEAQKLLARKEGIFVEPASASSIAGLKKLLEEG 358
           NP +   AL+    + G  E+V D EI+E  KLLA  EGIF E A  ++IA LKKL+E G
Sbjct: 318 NPADGVYALELARKTNGNIESVNDTEIIEGIKLLAETEGIFTETAGGTTIAVLKKLVEAG 377

Query: 359 IIDRDERIVCITTGHGLKDPDAAIRASEEPIKIECDMNVLKR 400
            ID +E  V   TG+GLK  +A      EP+ IE  ++  +R
Sbjct: 378 KIDPEETTVVYITGNGLKTQEAVQGYVGEPLTIEAKLDSFER 419


Lambda     K      H
   0.317    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 469
Number of extensions: 29
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 437
Length adjustment: 32
Effective length of query: 373
Effective length of database: 405
Effective search space:   151065
Effective search space used:   151065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate 2629601819 Ga0074568_113886 (L-threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.26409.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26409.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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