Align Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 (characterized)
to candidate 2629603407 Ga0074568_115476 carbamoyl-phosphate synthase large subunit
Query= SwissProt::Q42601
(1187 letters)
>IMG__TrieryIMS101_FD:2629603407
Length = 1076
Score = 1448 bits (3748), Expect = 0.0
Identities = 719/1084 (66%), Positives = 890/1084 (82%), Gaps = 10/1084 (0%)
Query: 94 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALREEGYEVILINSNPATIMTDPETAN 153
+R D++KI+++G+GPIVIGQACEFDYSGTQACKALREEG+EV+L+NSNPATIMTDPE A
Sbjct: 3 RRQDIRKILLVGSGPIVIGQACEFDYSGTQACKALREEGFEVVLVNSNPATIMTDPEIAE 62
Query: 154 RTYIAPMTPELVEQVIEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLGA 213
TYI P+TPEL+E+VI KERPDALLPTMGGQTALN+AV+LA++G L KYGV+LIGAKL A
Sbjct: 63 CTYIEPLTPELIEKVIAKERPDALLPTMGGQTALNIAVSLAKNGTLAKYGVDLIGAKLPA 122
Query: 214 IKKAEDRELFKDAMKNIGLKTPPSGIGTTLDECFDIAEKIGEFPLIIRPAFTLGGTGGGI 273
I+ AEDR+LFK+AM IG++ PSGI + +E IA+KIG +PLIIRPAFTLGGTGGGI
Sbjct: 123 IEMAEDRQLFKEAMGRIGIQVCPSGIASNWEEAKAIAQKIGTYPLIIRPAFTLGGTGGGI 182
Query: 274 AYNKEEFESICKSGLAASATSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMG 333
AYN+EE+E + + G+ AS SQ+LVEKSL+GWKEYELEVMRDLADNVVIICSIENIDPMG
Sbjct: 183 AYNQEEYEVMAQGGIDASPVSQILVEKSLIGWKEYELEVMRDLADNVVIICSIENIDPMG 242
Query: 334 VHTGDSITVAPAQTLTDREYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMIIEMN 393
+HTGDS+TVAPAQTLTD+EYQRLRD SI IIREIGVE GGSN+QFAV+P++G+V++IEMN
Sbjct: 243 IHTGDSVTVAPAQTLTDKEYQRLRDASIKIIREIGVETGGSNIQFAVHPLNGDVIVIEMN 302
Query: 394 PRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITRKTPASFEPSIDYVVTKIPRF 453
PRVSRSSALASKATGFPIAKMAAKL+VGYTLD+IPNDIT+KTPASFEP+IDYVVTKIPRF
Sbjct: 303 PRVSRSSALASKATGFPIAKMAAKLAVGYTLDEIPNDITKKTPASFEPTIDYVVTKIPRF 362
Query: 454 AFEKFPGSQPLLTTQMKSVGESMALGRTFQESFQKALRSLECGFSGWGCAKIKELDWDWD 513
AFEKFPGSQP+LTTQMKSVGE+MA+GRTFQESFQKALRSLE G +G+G + +++ +
Sbjct: 363 AFEKFPGSQPVLTTQMKSVGEAMAIGRTFQESFQKALRSLETGRAGFGADRWEKIP-SLE 421
Query: 514 QLKYSLRVPNPDRIHAIYAAMKKGMKIDEIYELSMVDKWFLTQLKELVDVEQYLMSGTLS 573
Q++ LR PNP+R+ + A+ GM ++EIYEL+ +D WFL +++EL++ E+ + L+
Sbjct: 422 QVRSGLRTPNPERLFTVRHALLLGMSLEEIYELTGIDIWFLDKMRELINTEKLIKYTPLN 481
Query: 574 EITKEDLYEVKKRGFSDKQIAFATKTTEEEVRTKRISLGVVPSYKRVDTCAAEFEAHTPY 633
E+TKE L+++K++GFSD+QIA+ +KTTE+EVR+ R+SLG+ P YK VDTCAAEFEA TPY
Sbjct: 482 ELTKEQLWDIKRQGFSDRQIAYCSKTTEDEVRSYRLSLGIKPVYKTVDTCAAEFEALTPY 541
Query: 634 MYSSYDVECESAPNNKKKVLILGGGPNRIGQGIEFDYCCCHTSFALQDAGYETIMLNSNP 693
YS+Y+ E E P+ K+KV+ILGGGPNRIGQGIEFDYCCCH S+AL G+ETIM+NSNP
Sbjct: 542 YYSTYEEESEILPSEKRKVMILGGGPNRIGQGIEFDYCCCHASYALGADGFETIMVNSNP 601
Query: 694 ETVSTDYDTSDRLYFEPLTIEDVLNVIDLEKPDGIIVQFGGQTPLKLALPIKHYLDKHMP 753
ETVSTDYDTSDRLYFEPLT EDVLN+I+ E P GIIVQFGGQTPLKLA+P++ YL++
Sbjct: 602 ETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPVGIIVQFGGQTPLKLAVPLQKYLEQ--- 658
Query: 754 MSLSGAGPVRIWGTSPDSIDAAEDRERFNAILDELKIEQPKGGIAKSEADALAIAKEVGY 813
+IWGTSPDSID AEDRERF IL +L I Q G+A+S DAL +A +GY
Sbjct: 659 ----VDAQTKIWGTSPDSIDTAEDRERFEKILRDLDIRQAANGLARSFEDALTVAHTIGY 714
Query: 814 PVVVRPSYVLGGRAMEIVYDDSRLITYLENAVQVDPERPVLVDKYLSDAIEIDVDTLTDS 873
PVVVRPSYVLGGRAMEIVY D L Y++ AVQV+PE P+L+DK+L++A+E+DVD + DS
Sbjct: 715 PVVVRPSYVLGGRAMEIVYSDQELERYMKFAVQVEPEHPILIDKFLNNAVEVDVDAIADS 774
Query: 874 YGNVVIGGIMEHIEQAGVHSGDSACMLPTQTIPASCLQTIRTWTTKLAKKLNVCGLMNCQ 933
G VVIGGIMEHIE+AG+HSGDSAC +P QT+ ++ ++TIR WT LAK LNV GLMN Q
Sbjct: 775 TGRVVIGGIMEHIEEAGIHSGDSACSIPYQTLTSAAVETIRQWTVALAKALNVIGLMNIQ 834
Query: 934 YAITTSGDVFLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLKDLNFEKEVIPKHV 993
+A+ V++LEANPRASRTVPFVSKAIG PLAK A+ VMSGK+L++L F E IP HV
Sbjct: 835 FAV-QGETVYILEANPRASRTVPFVSKAIGIPLAKIASRVMSGKNLEELGFIDEQIPDHV 893
Query: 994 SVKEAVFPFEKFQGCDVILGPEMRSTGEVMSISSEFSSAFAMAQIAAGQKLPLSGTVFLS 1053
SVKEAV PF KF G D +LGPEMRSTGE M I +F AFA AQ++AGQKLPL GTVF+S
Sbjct: 894 SVKEAVLPFAKFPGIDTVLGPEMRSTGEAMGIDVDFGKAFAKAQLSAGQKLPLEGTVFVS 953
Query: 1054 LNDMTKPHLEKIAVSFLELGFKIVATSGTAHFLELKGIPVERVLKLHEGRPHAADMVANG 1113
++D K + + ++LG K+VAT GT L L + V +LKLHEGRP+ D + NG
Sbjct: 954 MSDRYKEAVVPVVKDLVDLGLKVVATEGTRKILRLHDLEVGLMLKLHEGRPNVLDGIKNG 1013
Query: 1114 QIHLMLITSSGDALDQKDGRQLRQMALAYKVPVITTVAGALATAEGIKSLKSSAIKMTAL 1173
+I L++I SGD + DG ++R+ AL YK+ +ITT+AGA ATA I++LKS A+++ A+
Sbjct: 1014 EIQLIIIIPSGDEA-RADGIKIRRSALDYKITLITTIAGAKATAAAIRALKSGALEVKAI 1072
Query: 1174 QDFF 1177
QD++
Sbjct: 1073 QDYY 1076
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3189
Number of extensions: 133
Number of successful extensions: 15
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1187
Length of database: 1076
Length adjustment: 46
Effective length of query: 1141
Effective length of database: 1030
Effective search space: 1175230
Effective search space used: 1175230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate 2629603407 Ga0074568_115476 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.28499.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28499.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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