Alignments for a candidate for thrC in Dinoroseobacter shibae DFL-12

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate 3607737 Dshi_1146 threonine synthase (RefSeq)

Query= BRENDA::Q8YFS0
         (463 letters)



>FitnessBrowser__Dino:3607737
          Length = 463

 Score =  517 bits (1332), Expect = e-151
 Identities = 263/458 (57%), Positives = 326/458 (71%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60
           M+Y+STRG+AP + F +A+LAGLA DGGLY+P+  P  T  +IRA+ G  Y E+A  V+ 
Sbjct: 1   MRYISTRGQAPAMAFHEAMLAGLASDGGLYVPETVPTLTEAEIRAMAGLPYEEIAFRVMM 60

Query: 61  PFTGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLA 120
           PF G      +F   +  AYG F HDA  PL Q   N F+LELFHGPTLAFKD AMQL+ 
Sbjct: 61  PFLGNSFTEEEFRTDIATAYGGFGHDARAPLKQLGPNHFLLELFHGPTLAFKDFAMQLIG 120

Query: 121 RMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSS 180
           ++    L +RG R TIVGATSGDTG AAIEAF G  + D+FIL+P+GRVS VQ+RQMT+ 
Sbjct: 121 QLFQRELTRRGSRVTIVGATSGDTGSAAIEAFRGIASVDVFILYPHGRVSEVQRRQMTTP 180

Query: 181 GFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALS 240
              NVHAL++ G+FDDCQ  +K MFND  F D + L+GVNSINWAR++ QVVYYF+AA S
Sbjct: 181 TEDNVHALALHGHFDDCQARLKDMFNDHGFRDGVRLAGVNSINWARVLAQVVYYFSAATS 240

Query: 241 LGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGV 300
           LGAPDR +SFTVPTGNFGDIFAGY+A+RMGLPI+ L+IATN NDIL R L +GAYE   V
Sbjct: 241 LGAPDRKISFTVPTGNFGDIFAGYIARRMGLPIDTLVIATNQNDILHRCLTTGAYETDAV 300

Query: 301 AQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSA 360
             + SPSMDIQ+SSNFERLLF+ + RD AAV  LM  LK  GGFT+S+  L+ +R  F++
Sbjct: 301 IPSISPSMDIQVSSNFERLLFDVYDRDGAAVAQLMDELKTKGGFTLSQGALTRLREGFAS 360

Query: 361 GRSTVDETAATIESVLSKDGYLLDPHSAIGVKVAREKASGTAPMVVLATAHPAKFPDAVK 420
           GR++ DET+ATI         LL PHSA+GV VA +      PMV LATAHPAKFP AV+
Sbjct: 361 GRASEDETSATITRARDTMNELLCPHSAVGVHVAEQHIEPGVPMVTLATAHPAKFPAAVE 420

Query: 421 AACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVR 458
           AA GV P LP  +  L +R E  T + N+L  ++  +R
Sbjct: 421 AATGVHPPLPPRMETLYERPERLTEVPNDLGALQTLIR 458


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 585
Number of extensions: 16
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 463
Length adjustment: 33
Effective length of query: 430
Effective length of database: 430
Effective search space:   184900
Effective search space used:   184900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate 3607737 Dshi_1146 (threonine synthase (RefSeq))
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.19353.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19353.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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