Alignments for a candidate for hisE in Dinoroseobacter shibae DFL-12

Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (characterized)
to candidate 3608110 Dshi_1515 Phosphoribosyl-AMP cyclohydrolase (RefSeq)

Query= SwissProt::O26347
         (138 letters)



>FitnessBrowser__Dino:3608110
          Length = 119

 Score =  122 bits (305), Expect = 2e-33
 Identities = 59/102 (57%), Positives = 77/102 (75%), Gaps = 1/102 (0%)

Query: 21  EDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVK 80
           + LI A+AQD  +GEVLM+A+MN EA+ RTLETG   YWS SR   W+KGESSGHVQ + 
Sbjct: 13  QGLIPAIAQDAASGEVLMMAWMNAEAVARTLETGRVTYWSRSRQAFWIKGESSGHVQTLV 72

Query: 81  DVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSI-DGDELKV 121
           ++ VDCD D ++L+V QEG ACHT  R+CFY +I DG E+++
Sbjct: 73  EMRVDCDRDCLLLQVRQEGPACHTNRRTCFYTAIRDGAEVEL 114


Lambda     K      H
   0.318    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 119
Length adjustment: 14
Effective length of query: 124
Effective length of database: 105
Effective search space:    13020
Effective search space used:    13020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)

Align candidate 3608110 Dshi_1515 (Phosphoribosyl-AMP cyclohydrolase (RefSeq))
to HMM PF01502 (PRA-CH)

Software error:

../bin/blast/fastacmd -i /tmp/list.16123.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16123.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.