Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate 3608146 Dshi_1551 3-dehydroquinate dehydratase, type II (RefSeq)
Query= BRENDA::N1V364
(155 letters)
>FitnessBrowser__Dino:3608146
Length = 150
Score = 168 bits (425), Expect = 4e-47
Identities = 79/134 (58%), Positives = 102/134 (76%)
Query: 16 LLVLNGPNLNLLGTREPQIYGSDTLEDAETLAARAAEAHGLAVECLQSNHEGVLIDAIHA 75
+ +LNGPNLNLLGTR+P++YG+ TL D E + R A+A GL +E Q+NHEGVLID IHA
Sbjct: 3 ITILNGPNLNLLGTRQPEVYGATTLADIEHMCQRKAQALGLEIEFNQTNHEGVLIDQIHA 62
Query: 76 ARGTAAGIVINPGGYTHTSVALRDALSGVDLPVVEVHISNIHRREEFRHHSYISGIAVAV 135
AR + G++IN G YTHTSVAL DA++ V LP VEVH+SNIH RE FRH S++S +A+ +
Sbjct: 63 ARSESDGLIINAGAYTHTSVALMDAVASVSLPTVEVHLSNIHARESFRHTSFLSPVALGL 122
Query: 136 IAGAGISGYKFAVD 149
I G G +GY A+D
Sbjct: 123 ICGFGATGYVMALD 136
Lambda K H
0.317 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 150
Length adjustment: 17
Effective length of query: 138
Effective length of database: 133
Effective search space: 18354
Effective search space used: 18354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)
Align candidate 3608146 Dshi_1551 (3-dehydroquinate dehydratase, type II (RefSeq))
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.9983.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9983.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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