Alignments for a candidate for argC in Dinoroseobacter shibae DFL-12

Align Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 (characterized)
to candidate 3608357 Dshi_1759 N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq)

Query= SwissProt::Q93Z70
         (401 letters)



>FitnessBrowser__Dino:3608357
          Length = 341

 Score =  367 bits (943), Expect = e-106
 Identities = 189/342 (55%), Positives = 242/342 (70%), Gaps = 5/342 (1%)

Query: 61  IGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVKDA 120
           I +LGASGYTGAE+VRL+A HP  ++T ++ADRKAGQ+M +VFPHLR   LP LV + D 
Sbjct: 4   IAILGASGYTGAELVRLIATHPRMRITALSADRKAGQTMGAVFPHLRHLDLPALVKIDDI 63

Query: 121 DFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIAEYEEWYGQPHKAVELQK 180
           DF  VD VFC LPH T+Q +I  LP ++KIVDLSADFRLR+   Y +WYG PH A++LQ 
Sbjct: 64  DFGGVDLVFCALPHATSQSVIAALPKSVKIVDLSADFRLRDPEAYAKWYGGPHAALDLQA 123

Query: 181 EVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGVSGAG 240
           E VYGLTE  RE I+ ARLVA  GC   T Q  L PL+ A +I  + IIID K+GVSGAG
Sbjct: 124 EAVYGLTEFYREQIRDARLVAGTGCNAATGQYALRPLIAAGVIDLDEIIIDLKTGVSGAG 183

Query: 241 RGAKEANLYSEIAEGISSYGV-TRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQS 299
           R  KE  L++E++EG  +Y V   HRH+ E +Q  S +A  ++ V FTPHL+P  RG+ +
Sbjct: 184 RSLKENLLHAELSEGAHAYAVGGMHRHLGEFDQEFSALAGREIKVQFTPHLLPANRGILA 243

Query: 300 TIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVRGSNYCHMSVFPDRIPG 359
           T+YV+   G  TE ++  L  +YEDE FV +L EG  P T +VRGSN+ H+ V  DRIPG
Sbjct: 244 TVYVK---GEATE-IYDALADAYEDEPFVVMLPEGEHPSTRHVRGSNFVHIGVVRDRIPG 299

Query: 360 RAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 401
           RA++I+ +DNL KG+SGQALQN N+ML   ETTGL+  P+FP
Sbjct: 300 RAVVIAALDNLTKGSSGQALQNANLMLDIEETTGLMMTPVFP 341


Lambda     K      H
   0.318    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 412
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 341
Length adjustment: 30
Effective length of query: 371
Effective length of database: 311
Effective search space:   115381
Effective search space used:   115381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate 3608357 Dshi_1759 (N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq))
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.2535.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2535.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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