Alignments for a candidate for trpD_2 in Dinoroseobacter shibae DFL-12

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate 3608399 Dshi_1799 anthranilate phosphoribosyltransferase (RefSeq)

Query= SwissProt::P83827
         (329 letters)



>FitnessBrowser__Dino:3608399
          Length = 339

 Score =  243 bits (621), Expect = 4e-69
 Identities = 146/309 (47%), Positives = 185/309 (59%), Gaps = 11/309 (3%)

Query: 14  EEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVHRRPL 73
           E E A+E+   L  GE +P +  GLL+AL  RGE   E AA A  MR     +R     +
Sbjct: 21  EAEAAFEI---LFEGEATPSQMGGLLMALRTRGETVAEYAAAAAVMRAKCNAVRAPEGAM 77

Query: 74  LDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPP 133
            DIVGTGGDGKG +N+ST  A V A  GV VAKHGNR  SS++G+AD L  +G+++   P
Sbjct: 78  -DIVGTGGDGKGTLNISTATAFVVAGAGVPVAKHGNRNLSSKSGAADALAQMGIEVMVGP 136

Query: 134 ERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVF 193
             V  A+ E+G  F+ A + HPA+RHV P RAELG RT+FN+LGPLTNPAG    + G F
Sbjct: 137 AVVERALSEIGIAFMMAPMHHPAIRHVMPTRAELGTRTMFNILGPLTNPAGVKRQLTGAF 196

Query: 194 SPEWLAPMAEALERLGAR-GLVVHG-EGADEL-VLGENRVVEVGKGA---YALTPEEVGL 247
           S + + PMAE L  LG+    +VHG +G DEL + G + V  +  GA   + + PEE GL
Sbjct: 197 SRDLIRPMAETLAALGSDVAWLVHGSDGTDELTITGVSWVAGLSDGAVTEFEVHPEEAGL 256

Query: 248 KRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKEGVALA 307
              P EA+ GG PEEN A  R LL GE      DAV L A A    AG+  +L +GV LA
Sbjct: 257 PVHPFEAILGGTPEENGAAFRALLAGEASA-YRDAVLLNAAAALKVAGRVTALPDGVMLA 315

Query: 308 REVLASGEA 316
            E + SG A
Sbjct: 316 AEAIDSGAA 324


Lambda     K      H
   0.317    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 329
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 339
Length adjustment: 28
Effective length of query: 301
Effective length of database: 311
Effective search space:    93611
Effective search space used:    93611
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate 3608399 Dshi_1799 (anthranilate phosphoribosyltransferase (RefSeq))
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.6976.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6976.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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