Alignments for a candidate for ilvC in Dinoroseobacter shibae DFL-12

Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate 3609007 Dshi_2396 ketol-acid reductoisomerase (RefSeq)

Query= metacyc::MONOMER-18814
         (338 letters)



>FitnessBrowser__Dino:3609007
          Length = 340

 Score =  456 bits (1174), Expect = e-133
 Identities = 227/340 (66%), Positives = 267/340 (78%), Gaps = 2/340 (0%)

Query: 1   MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGV-NVTVGLRKSGASWNKAANA 59
           M+V+YD+D D++LIK K V I+GYGSQGHAHALNL+DSG  N+ V LR+  AS  KA   
Sbjct: 1   MRVYYDRDCDVNLIKDKKVAILGYGSQGHAHALNLRDSGAKNLVVALREGSASAKKAEAE 60

Query: 60  GLQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPR 119
           GLQV  +AEA    D++M  +PDE  A+ YK  VHDNI+EGAA+AFAHG NVH+G + P+
Sbjct: 61  GLQVMGIAEAAAWCDLIMFTMPDELQAETYKKYVHDNIREGAAIAFAHGLNVHFGLIEPK 120

Query: 120 ADLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGII 179
           A +DVIM+APK PGHTVR  YT+GGGVP L+AV  + +G A +I LSY +A GGGR+GII
Sbjct: 121 AGVDVIMMAPKGPGHTVRGEYTKGGGVPCLVAVDTDATGRALEIGLSYCSAIGGGRSGII 180

Query: 180 ETNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIY 239
           ETNFREE ETDLFGEQAVLCGG VELI+ GFETLVEAGYAPEMAYFECLHE+KLIVDLIY
Sbjct: 181 ETNFREECETDLFGEQAVLCGGLVELIRMGFETLVEAGYAPEMAYFECLHEVKLIVDLIY 240

Query: 240 EGGIANMNYSISNNAEYGEYVTGPRVVT-EETKKAMKQCLTDIQTGEYAKSFLLENKAGA 298
           EGGIANMNYSISN AEYGEYV+GPRV+  +ETK  MK  LTDIQTG++ + F+ EN  G 
Sbjct: 241 EGGIANMNYSISNTAEYGEYVSGPRVLPYDETKARMKAILTDIQTGKFVRDFMQENTVGQ 300

Query: 299 PTLISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338
           P     RRL  EHQIE VG +LR MMPWI+  K+VDQ KN
Sbjct: 301 PFFKGTRRLNDEHQIEAVGKELRGMMPWISAGKLVDQEKN 340


Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 409
Number of extensions: 16
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 340
Length adjustment: 28
Effective length of query: 310
Effective length of database: 312
Effective search space:    96720
Effective search space used:    96720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate 3609007 Dshi_2396 (ketol-acid reductoisomerase (RefSeq))
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.15775.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15775.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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