Alignments for a candidate for asd in Dinoroseobacter shibae DFL-12

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate 3609858 Dshi_3240 aspartate-semialdehyde dehydrogenase (RefSeq)

Query= SwissProt::P23247
         (337 letters)



>FitnessBrowser__Dino:3609858
          Length = 340

 Score =  309 bits (791), Expect = 8e-89
 Identities = 167/332 (50%), Positives = 226/332 (68%), Gaps = 6/332 (1%)

Query: 5   FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW 64
           + V + GATG VG  ML +L ER+FPVDE+ +LAS +S G    F  KT++ ++++ FD+
Sbjct: 3   YKVVVVGATGNVGREMLNILAERQFPVDEIAVLASRKSLGTEVSFGDKTLKTKDLDTFDF 62

Query: 65  SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNR 124
           +   IA F+ G   + ++AP AA A  VVIDN+S +RYD  IPLVVPEVNPEA+ +++N+
Sbjct: 63  TGWDIAFFAVGSTATKEYAPRAAAAKCVVIDNSSLYRYDPQIPLVVPEVNPEAVEDYKNK 122

Query: 125 NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKL-LNGY 183
            IIANPNCST QM+VALKP++D   I+R+ V+TYQSVSG GK  IDEL  QT  + + G 
Sbjct: 123 YIIANPNCSTAQMVVALKPLHDRARIKRVVVSTYQSVSGTGKEAIDELWDQTKGMYVPGQ 182

Query: 184 PAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFY 243
               + + +QIAFN IP ID F+++G TKEE KMV ET+KI  DP+I V  TCVRVPVF 
Sbjct: 183 EKAPSVYPKQIAFNVIPHIDVFLEDGSTKEEWKMVAETKKIV-DPAIKVTATCVRVPVFV 241

Query: 244 GHAEAVHVETRAPIDAEQVMDMLEQTDGIELF---RGADFPTQVRDAGGKDHVLVGRVRN 300
           GH+EA+++E    ID ++V D+L +  GI +        + T V +  G     + R+R 
Sbjct: 242 GHSEAINIEFEEFIDEDEVRDILREAPGIMVVDKREDGGYVTPV-ECVGDFATFISRIRQ 300

Query: 301 DISHHSGINLWVVADNVRKGAATNAVQIAELL 332
           D +  +GINLW V+DN+RKGAA NAVQIAE L
Sbjct: 301 DSTIDNGINLWCVSDNLRKGAALNAVQIAETL 332


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 340
Number of extensions: 11
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 340
Length adjustment: 28
Effective length of query: 309
Effective length of database: 312
Effective search space:    96408
Effective search space used:    96408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate 3609858 Dshi_3240 (aspartate-semialdehyde dehydrogenase (RefSeq))
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.11798.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11798.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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