Alignments for a candidate for argH in Chlorobium phaeobacteroides BS1

Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate 642683824 Cphamn1_1327 argininosuccinate lyase (EC 4.3.2.1)

Query= BRENDA::Q8DVX5
         (460 letters)



>IMG__ChlphaBS1_FD:642683824
          Length = 466

 Score =  441 bits (1134), Expect = e-128
 Identities = 224/459 (48%), Positives = 309/459 (67%)

Query: 2   TTKNHKLWGGRFEAGLAQWVEEFGASISFDQKLAEFDLKGSIAHVTMLGEKGIISQEDAA 61
           +T    LW  RF     +    F +S+  D+ L + D+KGSIAHVTML E+ II  E+A 
Sbjct: 6   STGKELLWQSRFSEPFDREALLFSSSVDVDKVLYQEDIKGSIAHVTMLSEEAIIPVEEAR 65

Query: 62  TIKAGLEDLLEEYKAGQLKFDVSNEDIHMNMESLLTAKIGPVAGKLHTARSRNDQVATDM 121
            I  GLED+ +E  +G L  D  +EDIH  +E+ L  KIGP+AGK+H+ RSRNDQVATD 
Sbjct: 66  LIIEGLEDIEQEISSGALIPDWEDEDIHTVIENRLKEKIGPIAGKMHSGRSRNDQVATDT 125

Query: 122 HLYLKAKLDEVIEKLANLRTVLVDLADKHVHTIMPGYTHLQHAQPISFGHHLMAYYNMFT 181
            LYLK  + E+ E L  L+T+LV+ AD + +TI+ GYTHLQ AQP+S GH+ +AY+NMF 
Sbjct: 126 RLYLKKVIGELGEALDGLKTLLVEKADIYRNTIIFGYTHLQRAQPVSAGHYYLAYFNMFL 185

Query: 182 RDSERFIFNVKHTDLSPLGAAALAGTTFPIDREMTAQLMGFAEPYSNSLDAVSDRDFILE 241
           RD ER     K  D+SPLGAAA AG+T PI+ + + +L+ F++ + NS DAVSDRD I+E
Sbjct: 186 RDGERLKDLFKRVDISPLGAAAFAGSTLPINAKRSMELLDFSDLFQNSTDAVSDRDIIIE 245

Query: 242 FLSNASILMMHMSRMCEEVISWCSHEYQFVTLSDTFSTGSSIMPQKKNPDMAELIRGKSG 301
           F+S  SI+MMH+SR CE++I W S E+ ++ +SD FSTGSSIMPQKKN D+AEL+RGK+G
Sbjct: 246 FISACSIIMMHLSRFCEDLILWSSSEFNYIEISDAFSTGSSIMPQKKNADIAELVRGKTG 305

Query: 302 RVYANLFGLLTVMKALPLAYNKDLQEDKEGMFDTAETITVALDILAGMLSSMIVNDKHMA 361
           RVY NL  +LT+MK+LPL+YN+D+QEDK  +FD+A +   ++ I   ML+   +N+K + 
Sbjct: 306 RVYGNLMSILTIMKSLPLSYNRDMQEDKPPLFDSAGSTVSSVRIFTKMLAHTRLNEKRLK 365

Query: 362 ESTQKDFSNATELADYLASKGMPFRQAHEIVGKLILECSKNGHYLQDVPLERYQTISDLI 421
             T +D S ATE+A+YL  K +PFR+AH I GK++    +    L  + LE Y+   DL 
Sbjct: 366 TLTGEDLSLATEIAEYLVRKNLPFREAHRITGKIVSHAIEKRTSLPKISLEEYRGFCDLF 425

Query: 422 EEDVYETLKSHTAVERRHSLGGTGFEQVKWQIAEAKKAL 460
            ED+Y+ L    ++  +HS G T F  V+ QI  A+  L
Sbjct: 426 NEDLYDALTPEASINSKHSHGSTSFASVEQQITIARGKL 464


Lambda     K      H
   0.318    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 576
Number of extensions: 17
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 466
Length adjustment: 33
Effective length of query: 427
Effective length of database: 433
Effective search space:   184891
Effective search space used:   184891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate 642683824 Cphamn1_1327 (argininosuccinate lyase (EC 4.3.2.1))
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.1260.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1260.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.