Alignments for a candidate for argC in Chlorobium phaeobacteroides BS1

Align N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; EC 1.2.1.38; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase (uncharacterized)
to candidate 642683834 Cphamn1_1337 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Query= curated2:Q8KDE3
         (341 letters)



>IMG__ChlphaBS1_FD:642683834
          Length = 338

 Score =  424 bits (1089), Expect = e-123
 Identities = 208/334 (62%), Positives = 259/334 (77%), Gaps = 1/334 (0%)

Query: 9   KKVTVSVIGASGYSGAELVKLLMKHPGIVIEELYAHTQAGKRFTELYPSIPCDKTFQTYA 68
           KK TVS+IGASGYSGAEL K+L++HP + +E LYAHTQAGK+  ++YP+I  D   ++Y 
Sbjct: 5   KKPTVSIIGASGYSGAELAKILLRHPSVKLERLYAHTQAGKKMQDIYPAIDTDIVLESYG 64

Query: 69  GQTNSDVYLLALPHGEALQLVPGIVAAGKKVIDLSGDFRLKNTAEHKRFYGGDKSAEDVL 128
           G T+SD+Y LALPHGEAL+L+P +  AGK VIDLSGDFRLKN  EH +FY  +K    VL
Sbjct: 65  GATDSDIYFLALPHGEALKLLPSLAEAGKTVIDLSGDFRLKNHEEHLKFYSREKDPAAVL 124

Query: 129 QYGMPELFRDEIAGSTAISNPGCYATSIILGLAPLFLGGMAGLDVESVNVTAVSGISGAG 188
            Y MPEL+ D+I  +  +SNPGCYATSIILG+APL    +    V SV  TA+SG+SGAG
Sbjct: 125 TYAMPELYHDDIRLAKVVSNPGCYATSIILGIAPLVKKPVKDASVTSVCCTAISGLSGAG 184

Query: 189 RSAKLELSFSEMSGNMRAYKVGKHQHTPEIMQTLGTSVTDPSFRFVFTPMIAPYVRGIYS 248
           +SAK+ELSFSEMSGN+RAYK G HQHTPEI+Q L T   +P+F F+FTPMIAP VRGIY+
Sbjct: 185 KSAKVELSFSEMSGNVRAYKAGMHQHTPEILQALDTDTLNPAFNFMFTPMIAPLVRGIYT 244

Query: 249 VLNVRLASPVAMEPVRELYAGFYANAPFVRLRDGVTEVSHVAYTNFCDISLAFESD-GSL 307
           VLN++L   + +  +RE +  FY +APFVR+R+ +TEV HVAYTNFCDI +A  S+ G+ 
Sbjct: 245 VLNIQLEKHLTVSQIREHFREFYRSAPFVRIRNTMTEVQHVAYTNFCDIHIAESSENGTA 304

Query: 308 VIITAIDNLVKGAAGQAVQNMNLMLGFGETTALL 341
           VIITAIDNLVKGAAGQAVQNMN+MLG+ ET  +L
Sbjct: 305 VIITAIDNLVKGAAGQAVQNMNIMLGYDETLGIL 338


Lambda     K      H
   0.319    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 441
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 338
Length adjustment: 28
Effective length of query: 313
Effective length of database: 310
Effective search space:    97030
Effective search space used:    97030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate 642683834 Cphamn1_1337 (N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.5774.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5774.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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