Alignments for a candidate for asd in Chlorobium phaeobacteroides BS1

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate 642684670 Cphamn1_2183 aspartate semialdehyde dehydrogenase (EC 1.2.1.11)

Query= SwissProt::P23247
         (337 letters)



>IMG__ChlphaBS1_FD:642684670
          Length = 349

 Score =  317 bits (812), Expect = 3e-91
 Identities = 175/336 (52%), Positives = 224/336 (66%), Gaps = 14/336 (4%)

Query: 5   FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW 64
           +++AI GATG VG TML+VL ER+FPV E+  LASERS G+   F GK+ R        +
Sbjct: 18  YSIAILGATGLVGRTMLQVLDERDFPVREILPLASERSRGREIVFRGKSFRTDVPSAEVF 77

Query: 65  SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRN- 123
           S+  IALFSAG   S  WA +AAEAG VVIDN+S FR + D+PLVVPEVNPEAI + +  
Sbjct: 78  SRADIALFSAGATASRTWASVAAEAGAVVIDNSSAFRMEPDVPLVVPEVNPEAIFDVQGK 137

Query: 124 -RNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNG 182
            + +IANPNCSTIQM+V LKP++D   + R+ V+TYQSV+G GK G D L  + A    G
Sbjct: 138 PKGVIANPNCSTIQMVVVLKPLHDRYRVRRVVVSTYQSVTGKGKQGRDALEDELA----G 193

Query: 183 YPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVF 242
              E+     QIAFN +P ID F+DNGYTKEEMKMV ET+KI  D S+ V+PT VR+PV+
Sbjct: 194 KMPESFVHGHQIAFNAVPHIDVFLDNGYTKEEMKMVNETRKIMCDESLSVSPTTVRIPVY 253

Query: 243 YGHAEAVHVETRAPIDAEQVMDMLEQTDGIELFRGADFPT-----QVRDAGGKDHVLVGR 297
            GH E++++E     D +++ +ML  T GI +    D P+         +  KD V VGR
Sbjct: 254 GGHGESMNIEFEDDFDVDELREMLAGTPGIIV---QDDPSSGLYPMPLTSYEKDEVFVGR 310

Query: 298 VRNDISHHSGINLWVVADNVRKGAATNAVQIAELLV 333
           +R D      +NLW+VADN+RKGAATNAVQIAE LV
Sbjct: 311 IRRDFWQPKTVNLWIVADNLRKGAATNAVQIAEKLV 346


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 364
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 349
Length adjustment: 29
Effective length of query: 308
Effective length of database: 320
Effective search space:    98560
Effective search space used:    98560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate 642684670 Cphamn1_2183 (aspartate semialdehyde dehydrogenase (EC 1.2.1.11))
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.2970.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2970.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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