Alignments for a candidate for argE in Shewanella amazonensis SB2B

Align Acetylornithine deacetylase; AO; Acetylornithinase; N-acetylornithinase; NAO; EC 3.5.1.16 (characterized)
to candidate 6936058 Sama_0255 acetylornithine deacetylase (RefSeq)

Query= SwissProt::P23908
         (383 letters)



>FitnessBrowser__SB2B:6936058
          Length = 383

 Score =  452 bits (1164), Expect = e-132
 Identities = 218/378 (57%), Positives = 278/378 (73%), Gaps = 1/378 (0%)

Query: 5   LPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPVPGTRNKFNM 64
           +P     + +LI  PSISATE  LD SN  +I LL DWF DLGF+ +V  V GTR+K N+
Sbjct: 4   IPDLKSRFSSLIYAPSISATEPQLDMSNHSVIALLNDWFSDLGFDCQVTKVAGTRDKRNL 63

Query: 65  LASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILDAL 124
           LA IG G GGLLLAGHTDTVPFD+GRW++DPF LTE D + YGLG+ DMKGFFA IL+A 
Sbjct: 64  LAKIGSGEGGLLLAGHTDTVPFDEGRWSQDPFVLTEKDDRWYGLGSCDMKGFFALILEAA 123

Query: 125 RDVDVTKLKKPLYILATADEETSMAGARYFAETTALRPDCAIIGEPTSLQPVRAHKGHIS 184
           +D+ +  L+KPLYI A+ADEET+M GA+ FA  T +RP+ AIIGEPT L+PV  HKGH++
Sbjct: 124 KDLPLHNLQKPLYIFASADEETTMEGAKAFAANTGIRPEYAIIGEPTGLKPVYMHKGHLA 183

Query: 185 NAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLKERYHYEAFTVPYPTLNLGHI 244
             IRI G+SGHSSDPARG+NAIE+MH  IG +L+L+ +L + Y  +AF+VPYPT+N GHI
Sbjct: 184 QGIRITGRSGHSSDPARGLNAIEIMHKVIGQLLKLKQHLADNYREDAFSVPYPTMNFGHI 243

Query: 245 HGGDASNRICACCELHMDIRPLPGMTLNELNGLLNDALAPVSERWPGRLTVDELHPPIPG 304
           HGGDA+NRIC CC+LH+DIRPLPG+ L +L  +L + L  ++  +PG + +  L+P    
Sbjct: 244 HGGDAANRICGCCDLHLDIRPLPGLALEDLELMLVNYLQDITRDYPGSVDIRTLYPGSEA 303

Query: 305 YECPPNHQLVEVVEKLLGAKTEVVNYCTEAPFIQTL-CPTLVLGPGSINQAHQPDEYLET 363
           +    +    ++VE L G + EVVNY TEAP+I  L C TLVLGPGSINQAHQPDEY+  
Sbjct: 304 FAGVKDSAWTQLVESLSGQQAEVVNYATEAPYINKLGCQTLVLGPGSINQAHQPDEYMAM 363

Query: 364 RFIKPTRELITQVIHHFC 381
             +KPT EL+ Q+IH  C
Sbjct: 364 DQLKPTVELLKQLIHKAC 381


Lambda     K      H
   0.320    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 454
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 383
Length adjustment: 30
Effective length of query: 353
Effective length of database: 353
Effective search space:   124609
Effective search space used:   124609
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate 6936058 Sama_0255 (acetylornithine deacetylase (RefSeq))
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.5906.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5906.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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