Alignments for a candidate for argB in Shewanella amazonensis SB2B

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate 6936060 Sama_0257 acetylglutamate kinase (RefSeq)

Query= BRENDA::A0A140NEG9
         (258 letters)



>FitnessBrowser__SB2B:6936060
          Length = 262

 Score =  224 bits (571), Expect = 1e-63
 Identities = 117/252 (46%), Positives = 167/252 (66%), Gaps = 1/252 (0%)

Query: 5   LIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNG 64
           L++K+GG LL  E  + RL        E  ++ +V+VHGGGC+VDE +K   +   K +G
Sbjct: 8   LVLKVGGALLQCEMGMARLMDTARQLLEKGEQ-VVLVHGGGCLVDEQLKANGMETVKLDG 66

Query: 65  LRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGL 124
           LRVTPA+Q+ II GALAGT+NK L   A K  + ++G+ L D + V     DE LG VG 
Sbjct: 67  LRVTPAEQMPIIAGALAGTSNKLLQGAAAKAGVVSMGMSLCDANMVTAVIKDERLGMVGE 126

Query: 125 AQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSG 184
             P   K +  +L  G+LP++SSI + ++G+L+NVNADQAA+ LA  LG  L+LLSDVSG
Sbjct: 127 VSPKDAKALEFILAQGWLPIISSIAMGEDGELLNVNADQAASVLAKLLGGKLVLLSDVSG 186

Query: 185 ILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLP 244
           +LDGKG+ I  + + + ++L++ G+I  GM VKV AAL+ A+ LG+PV +ASWR + Q+ 
Sbjct: 187 VLDGKGKLIPSLNSQEIDELVKLGVIEKGMKVKVEAALEVAQWLGQPVQVASWRDSGQMA 246

Query: 245 ALFNGMPMGTRI 256
           AL  G  +GT+I
Sbjct: 247 ALIKGEAVGTQI 258


Lambda     K      H
   0.317    0.136    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 218
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 262
Length adjustment: 24
Effective length of query: 234
Effective length of database: 238
Effective search space:    55692
Effective search space used:    55692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate 6936060 Sama_0257 (acetylglutamate kinase (RefSeq))
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.28603.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28603.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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