Alignments for a candidate for asp-kinase in Shewanella amazonensis SB2B

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate 6936415 Sama_0603 aspartate kinase III (RefSeq)

Query= BRENDA::P08660
         (449 letters)



>FitnessBrowser__SB2B:6936415
          Length = 452

 Score =  507 bits (1306), Expect = e-148
 Identities = 269/447 (60%), Positives = 338/447 (75%), Gaps = 1/447 (0%)

Query: 4   IVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGITNLLVALAEGLEPGER-FE 62
           +VV+KFGGTSVADF+AM+R A IVL+++  RLVV+SAS+G+TNLLV L +     ER  +
Sbjct: 3   LVVAKFGGTSVADFNAMSRCAAIVLANSATRLVVVSASSGVTNLLVELTQATVTDERRLQ 62

Query: 63  KLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMS 122
            L  I  IQ+AIL++L  P  +   ++ LL  I+VL+E+  L  S A+ DEL+S GE  S
Sbjct: 63  LLKQIAQIQYAILDKLERPQDVAAALDALLSRISVLSESLILNRSKAIMDELLSMGEQCS 122

Query: 123 TLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVITQ 182
            LLF  +LR++  ++  FDVR+VMRT+  FGRAEP I  +A LA   L P L   +V+TQ
Sbjct: 123 ALLFSAVLRQQGAKSSSFDVRQVMRTDSHFGRAEPQIEDIAALARDFLQPLLERDIVVTQ 182

Query: 183 GFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDE 242
           GFIG++ +GRTTTLGRGGSDY+AALLAEAL A  V+IWTDV GIYTTDPR+   A+ I E
Sbjct: 183 GFIGADAEGRTTTLGRGGSDYSAALLAEALRADAVEIWTDVAGIYTTDPRLAPNARPIAE 242

Query: 243 IAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTENPPLFRAL 302
           I+F EAAEMATFGAKVLHPAT+LPAVR  I VFVGSS++P  GGT + ++ +NPP++RA+
Sbjct: 243 ISFNEAAEMATFGAKVLHPATILPAVRQQIQVFVGSSREPEKGGTWIRHQVDNPPIYRAV 302

Query: 303 ALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTSTG 362
           A+RR+QTLL LHSL MLH+RGFLAE F  LARH ISVDLITTSEV+V+LTLD TGS STG
Sbjct: 303 AVRRDQTLLNLHSLQMLHARGFLAETFATLARHKISVDLITTSEVNVSLTLDKTGSDSTG 362

Query: 363 DTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGA 422
             LL+++LL ELS  CRV VE+ LALVA+IGN ++   G+ ++VF VLE  N+RMIC GA
Sbjct: 363 SGLLSEALLQELSQHCRVRVEDNLALVAIIGNRIASTPGICRQVFTVLENHNVRMICQGA 422

Query: 423 SSHNLCFLVPGEDAEQVVQKLHSNLFE 449
           S HNLC LV   +A QVV+ LH NLFE
Sbjct: 423 SPHNLCVLVAESEAAQVVKALHENLFE 449


Lambda     K      H
   0.320    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 471
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 452
Length adjustment: 33
Effective length of query: 416
Effective length of database: 419
Effective search space:   174304
Effective search space used:   174304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate 6936415 Sama_0603 (aspartate kinase III (RefSeq))
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.8888.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8888.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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