Alignments for a candidate for asp-kinase in Shewanella amazonensis SB2B

Align Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate 6936867 Sama_1049 aspartate kinase (RefSeq)

Query= SwissProt::A4VJB4
         (412 letters)



>FitnessBrowser__SB2B:6936867
          Length = 403

 Score =  327 bits (838), Expect = 4e-94
 Identities = 185/402 (46%), Positives = 267/402 (66%), Gaps = 4/402 (0%)

Query: 3   LIVQKFGGTSVGTVERIEQVAEKVKKFRDGGDDIVVVVSAMSGETNRLIDLAKQISEQPV 62
           + V+KFGGTSVGT ERIE VA+ + K    G+  V+V+SAM+GETNRL  +A  I     
Sbjct: 4   IYVKKFGGTSVGTFERIEAVADAIAKAHFEGERQVLVLSAMAGETNRLYAMAANIDPLAP 63

Query: 63  PRELDVMVSTGEQVTIALLAMALIKRGVPAVSYTGNQVRILTDSAHTKARILQIDAQRIQ 122
            RELD++VS GEQV+IAL+++AL +RGV A S  G+QV++ T+S   +A I  +D   + 
Sbjct: 64  ARELDMLVSAGEQVSIALMSIALARRGVNARSLLGSQVKVRTNSQFGRASIESVDTGLLM 123

Query: 123 RDIKAGRVVVVAGFQGVDEKGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTD 182
           + +  G V V+AGFQGV+E+G++TTLGRGGSDTT VA+AAAL+A ECQI+TDV GV+TTD
Sbjct: 124 QLLDEGAVPVIAGFQGVNEQGDVTTLGRGGSDTTAVAIAAALEAAECQIFTDVTGVFTTD 183

Query: 183 PRVVAKAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYSVPLRVLHSFQEGPGTLITL 242
           P +   AQ+LD I+FE M EMA  G+KVL   +V  A ++ V LRVL SF+ G GTLI  
Sbjct: 184 PNIDPDAQKLDSISFEAMYEMARQGAKVLHPDSVACARRHGVVLRVLSSFESGSGTLIRF 243

Query: 243 DEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMIVQNVAHDN 302
           DE E     I+ GIA  R +  +++ G+ D P     +   ++ A+V+ D++VQ +A + 
Sbjct: 244 DEPEHSGSGIV-GIAVTRGQGLVSVAGLVDQPQAEVALFQALANASVDTDLVVQ-LAEEK 301

Query: 303 TTDFTFTVHRNDYNNALQVLQGIAAEMGAREAIGDTNIAKVSIVGVGMRSHAGVASRMFE 362
                FT+ +   +  L ++  +A E    +   ++ +AKVS+V  G    A V +R+ E
Sbjct: 302 A--LAFTLAQGALDKVLTLIDRLALEQPLADVRHESPLAKVSLVSTGKAVMAEVGARVTE 359

Query: 363 ALAKENINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELD 404
            L  +NI ++++STSEIK+SVVI+E +L+ AVR+LH AF+L+
Sbjct: 360 LLEAQNIRVKLLSTSEIKLSVVIDEVHLQHAVRSLHRAFDLN 401


Lambda     K      H
   0.317    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 403
Number of extensions: 17
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 403
Length adjustment: 31
Effective length of query: 381
Effective length of database: 372
Effective search space:   141732
Effective search space used:   141732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate 6936867 Sama_1049 (aspartate kinase (RefSeq))
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.2919.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2919.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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