Alignments for a candidate for asp-kinase in Shewanella amazonensis SB2B

Align fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) (characterized)
to candidate 6939072 Sama_3170 bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq)

Query= ecocyc::ASPKINIIHOMOSERDEHYDROGII-MONOMER
         (810 letters)



>FitnessBrowser__SB2B:6939072
          Length = 797

 Score =  561 bits (1447), Expect = e-164
 Identities = 340/802 (42%), Positives = 463/802 (57%), Gaps = 22/802 (2%)

Query: 14  LHKFGGSSLADVKCYLRVAGIMAEYSQPDDMMVVSAAGSTTNQLINWLKLSQTDRLSAHQ 73
           LHKFGGSSLAD  CY RVA I+      DD++VVSAAG TTN L   L L     L   +
Sbjct: 6   LHKFGGSSLADADCYRRVAHILLTQGHSDDLVVVSAAGKTTNFLYKLLSLRDAGELWQEE 65

Query: 74  VQQTLRRYQCDLISGLLPAEEADSLISAFVSDLERLAALLD-SGINDAVYAEVVGHGEVW 132
           +Q  L  YQ +LI  LL AE+A  L     +D  +L +LL  + +ND   + VV  GE W
Sbjct: 66  LQ-VLISYQQNLIEQLLSAEQARYLRERLSTDKAQLVSLLSLATLNDYQTSHVVSFGERW 124

Query: 133 SARLMSAVLNQQGLPAAWLDAREFLRAERAAQPQVDEGLSYPLLQQLLVQHPGKRLVVTG 192
           SARLM+A+L + G+ A+ +DA   L A+  A P + E  S   +  +L +H  +R+V+TG
Sbjct: 125 SARLMAALLRESGVAASHVDACSILVADEGAVPNIREQESREKVAAMLAEHENERIVITG 184

Query: 193 FISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLL 252
           FI  N AGET+LLGRNGSD+SAT I +LA + RVTIW+DV GV++ADP K+ DA LL  +
Sbjct: 185 FICANPAGETLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKLLKSM 244

Query: 253 RLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIERVLASGTGARIVT 312
            L EA  LARL +PVLH+RTLQP+  +++ + +R SY P    T +    +S   A +VT
Sbjct: 245 SLAEADRLARLGSPVLHSRTLQPLFNTQVSMAVRSSYAPHTDFTLVAPT-SSQASAPVVT 303

Query: 313 SHDDVCLIEFQVPASQDFKLAHKEIDQILKRAQVRPLAVGVHNDRQLLQFCYTSE---VA 369
           +  +V L      A  D  LA       L  + + PLA      R  L+  YT E     
Sbjct: 304 NLSEVALFSLTTQADTDALLA------TLSASGLTPLA-SWQGSRGGLELAYTPENLKQV 356

Query: 370 DSALKILDEAGLPGELRLRQGLALVAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSDDG 429
            + LK   EA   G++ +     LVA+V A      L+   F + L  +         D 
Sbjct: 357 SAFLKANAEAYGLGDVSISNDFGLVALVSADAV---LYRKSFARLLSREAKPLY---HDT 410

Query: 430 ISLVAVLRTGPTESLIQGLHQSVFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTG 489
           +SLV ++       L Q +H+      KRIG++L G GNIG  W+ LF R QS+L     
Sbjct: 411 LSLVTLVPKAQVNLLTQKVHRRCAGPRKRIGVILLGVGNIGEAWVSLFRRAQSSLCRELE 470

Query: 490 FEFVLAGVVDSRRSLLSYDGLDASRALAFFNDEAVEQDEESLFLWMRAHPYDDLVVLDVT 549
               L G+V S R+ ++  G+        F + A +     LF  +     D+LV LD++
Sbjct: 471 ARIELVGLVSSSRAYINNAGVHLENWKTEFEEYATDWQYGQLFEALSTLNCDELVALDIS 530

Query: 550 ASQQLADQYLDFASHGFHVISANKLAGASDSNKYRQIHDAFEKTGRHWLYNATVGAGLPI 609
           AS  L  QY +F + G HV+SANKLAG+     YR +         +W YNA+ GAGLP+
Sbjct: 531 ASASLTLQYPEFFARGIHVVSANKLAGSGPLPFYRDLKQQLGNRRLYWRYNASCGAGLPV 590

Query: 610 NHTVRDLIDSGDTILSISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRDDLS 669
            H + DL +SGD++ ++ GIFSGTL WLF  +DG  PF++LV +A   G+TEPDPRDDLS
Sbjct: 591 QHALNDLHNSGDSVEAVGGIFSGTLCWLFEHYDGQRPFSDLVIEARGLGITEPDPRDDLS 650

Query: 670 GKDVMRKLVILAREAGYNIEPDQVRVESLVPAHCEGGSIDHFFENGDELNEQMVQRLEAA 729
           G+D+ RKL+ILARE G ++E D ++VES VP H    ++D F    DEL+  M   L AA
Sbjct: 651 GRDMQRKLLILAREIGLDLELDDIQVESPVPPHLAELTLDEFLARIDELDAPMADALAAA 710

Query: 730 REMGLVLRYVARFDANG---KARVGVEAVREDHPLASLLPCDNVFAIESRWYRDNPLVIR 786
              G VLRY+A  D  G    ARVG++ V + HP A+L P DNVF I S +Y+ NPL+IR
Sbjct: 711 AAEGKVLRYIAALDRAGGQLMARVGLQWVDKAHPYANLTPGDNVFVIRSTFYQGNPLIIR 770

Query: 787 GPGAGRDVTAGAIQSDINRLAQ 808
           GPGAGR+VTA A+QSD+ ++ +
Sbjct: 771 GPGAGREVTAAAVQSDLVQICR 792


Lambda     K      H
   0.320    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1429
Number of extensions: 55
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 810
Length of database: 797
Length adjustment: 41
Effective length of query: 769
Effective length of database: 756
Effective search space:   581364
Effective search space used:   581364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Align candidate 6939072 Sama_3170 (bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq))
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.16542.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16542.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.