Alignments for a candidate for glnA in Shewanella sp. ANA-3

Align glutamate--ammonia ligase; EC 6.3.1.2 (characterized)
to candidate 7023062 Shewana3_0300 glutamine synthetase (RefSeq)

Query= CharProtDB::CH_024014
         (469 letters)



>FitnessBrowser__ANA3:7023062
          Length = 469

 Score =  753 bits (1945), Expect = 0.0
 Identities = 366/469 (78%), Positives = 408/469 (86%)

Query: 1   MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKG 60
           MS E VL  L E EVKFVDLRFTDTKGKEQHV+IPAHQV+A+FFE+GKMFDGSSI GWKG
Sbjct: 1   MSVESVLKQLEELEVKFVDLRFTDTKGKEQHVSIPAHQVDADFFEDGKMFDGSSIAGWKG 60

Query: 61  INESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRSTG 120
           INESDMVLMPD +T V+DPF  ++T +IRCDILEPGT+ GYDRDPRSIAK+AE+YLRSTG
Sbjct: 61  INESDMVLMPDPTTFVLDPFTEETTALIRCDILEPGTMTGYDRDPRSIAKKAEEYLRSTG 120

Query: 121 IADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWNSSTQYEGGNKGHRPAVKGGY 180
           IADTVL GPEPEFFLFDD+RFG+ +SG  V ID  E AWNS T YEGGN GHRP VKGGY
Sbjct: 121 IADTVLVGPEPEFFLFDDVRFGTDMSGCFVKIDAKEAAWNSGTSYEGGNTGHRPFVKGGY 180

Query: 181 FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK 240
           FPV PVDS+QD+RS MCLV+E+MG VVEAHHHEVATAGQNE+ATRFNT+TKKADEIQI K
Sbjct: 181 FPVAPVDSSQDLRSAMCLVLEEMGQVVEAHHHEVATAGQNEIATRFNTLTKKADEIQILK 240

Query: 241 YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIG 300
           YVVHN+AH +GKTATFMPKP+ GDNGSGMH H SLSK+GVNLFAGDKYAGLSE ALYYIG
Sbjct: 241 YVVHNMAHAYGKTATFMPKPIVGDNGSGMHVHQSLSKDGVNLFAGDKYAGLSETALYYIG 300

Query: 301 GVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVSSPKARRIEVR 360
           G+IKHA+A+NA  NP+TNSYKRLVP +EAPVMLAYSARNRSASIRIPVV SPK RRIE R
Sbjct: 301 GIIKHARALNAFTNPSTNSYKRLVPHFEAPVMLAYSARNRSASIRIPVVPSPKGRRIETR 360

Query: 361 FPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAKEIPQVAGSLEEALN 420
           FPDP ANPYL FAALLMAG+DGI+NKIHPGEAMDK+LYDLP EEA EIPQVA SLE AL 
Sbjct: 361 FPDPHANPYLGFAALLMAGIDGIQNKIHPGEAMDKDLYDLPAEEAAEIPQVATSLENALE 420

Query: 421 ELDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 469
            L  D EFL  GGVF+++ I +YIAL+  E +RV  T HP+EFE+YYS+
Sbjct: 421 NLQADHEFLTRGGVFSEDFIQSYIALKSAEAERVSRTTHPLEFEMYYSL 469


Lambda     K      H
   0.318    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 773
Number of extensions: 17
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 469
Length adjustment: 33
Effective length of query: 436
Effective length of database: 436
Effective search space:   190096
Effective search space used:   190096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate 7023062 Shewana3_0300 (glutamine synthetase (RefSeq))
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.22944.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22944.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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