Alignments for a candidate for lysA in Shewanella sp. ANA-3

Align diaminopimelate decarboxylase (EC 4.1.1.20) (characterized)
to candidate 7023156 Shewana3_0390 diaminopimelate decarboxylase (RefSeq)

Query= BRENDA::Q9KVL7
         (417 letters)



>FitnessBrowser__ANA3:7023156
          Length = 414

 Score =  581 bits (1497), Expect = e-170
 Identities = 290/416 (69%), Positives = 333/416 (80%), Gaps = 2/416 (0%)

Query: 1   MDYFNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAV 60
           MD+F YQ D  L+AE   + DLA QYGTPLY+YSRATLERHWHAF+ +V D+PHL+CYAV
Sbjct: 1   MDHFLYQ-DNTLYAEGCRVNDLAQQYGTPLYIYSRATLERHWHAFNNAVADHPHLVCYAV 59

Query: 61  KANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKI 120
           KANSNL VLN LARLGSGFDIVS GEL RV+ AGGDP+KVVFSGVGKT AEM++AL L I
Sbjct: 60  KANSNLAVLNVLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMEQALNLGI 119

Query: 121 KCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAA 180
            CFNVES  EL++LN VAG LG  AP+SLR+NPDVDA THPYISTGL++NKFGI  D A 
Sbjct: 120 YCFNVESSAELEQLNDVAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAE 179

Query: 181 QVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGG 240
            V+  AH+LP+L V G+DCHIGSQLT + PF+DA DR+LALID L  +GI I H DVGGG
Sbjct: 180 VVFARAHALPHLQVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLADQGIVIEHFDVGGG 239

Query: 241 LGVVYRDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHK 300
           LGV Y DE PP P  YA ALL RL   R L+LIFEPGRAIAANAG+ VT+V +LK    K
Sbjct: 240 LGVTYDDETPPHPDVYAAALLARL-GDRKLKLIFEPGRAIAANAGIFVTQVLYLKENSDK 298

Query: 301 NFAIIDAAMNDLIRPALYQAWQDIIPLRPRQGEAQTYDLVGPVCETSDFLGKDRDLVLQE 360
            FAI+D AMNDLIRPALY AWQ+IIP+ PR  +AQ +D+VGPVCET DFLGKDR L +  
Sbjct: 299 RFAIVDGAMNDLIRPALYSAWQNIIPVNPRDEQAQVFDIVGPVCETGDFLGKDRALAIAA 358

Query: 361 GDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDGNKTYLVRQREELSSLWALESVLP 416
           GDLL VRSSGAYGF M+SNYNTRPR AEVMVDG+K YLVR+RE+L+ LW  E +LP
Sbjct: 359 GDLLVVRSSGAYGFAMASNYNTRPRAAEVMVDGDKAYLVREREKLAQLWQGEQLLP 414


Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 522
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 414
Length adjustment: 31
Effective length of query: 386
Effective length of database: 383
Effective search space:   147838
Effective search space used:   147838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate 7023156 Shewana3_0390 (diaminopimelate decarboxylase (RefSeq))
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.10663.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10663.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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