Alignments for a candidate for carA in Shewanella sp. ANA-3

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate 7023737 Shewana3_0967 carbamoyl phosphate synthase small subunit (RefSeq)

Query= SwissProt::P0A6F1
         (382 letters)



>FitnessBrowser__ANA3:7023737
          Length = 386

 Score =  605 bits (1560), Expect = e-178
 Identities = 295/382 (77%), Positives = 331/382 (86%)

Query: 1   MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 60
           + KSALLVLEDGT F G AIGA G +VGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI
Sbjct: 5   LTKSALLVLEDGTVFTGTAIGADGLSVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 64

Query: 61  GNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTR 120
           GN GTN+ D ES+ VHA GL+IRDLPL+AS+FRN + LS YLK +N+V IADIDTRKLTR
Sbjct: 65  GNTGTNNEDVESNGVHACGLIIRDLPLVASSFRNQQTLSDYLKANNVVGIADIDTRKLTR 124

Query: 121 LLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGG 180
           +LREKGAQ GCI+AG + D A AL  A+AFPGL GMDLAKEVTT +AY W +GSW L GG
Sbjct: 125 ILREKGAQAGCIMAGADLDEAKALAAAKAFPGLKGMDLAKEVTTDKAYPWRKGSWRLVGG 184

Query: 181 LPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSN 240
           LPE    + L + VVAYD+G K+NILRMLVDRGC +T+VPA+TSA DVL MNPDG+FLSN
Sbjct: 185 LPEDTPAEALKYKVVAYDYGVKQNILRMLVDRGCDVTVVPAKTSAADVLAMNPDGVFLSN 244

Query: 241 GPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDV 300
           GPGDP PCDYAI AIQ+ L+TD P+FGICLGHQLLALASGAKT+KMKFGHHG NHPV ++
Sbjct: 245 GPGDPEPCDYAIEAIQQILKTDTPIFGICLGHQLLALASGAKTLKMKFGHHGANHPVSNI 304

Query: 301 EKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGP 360
           EK  VMIT+QNHGFA DEATLPAN++VTHKSLFDG+LQGIH TDKPAFSFQGHPEASPGP
Sbjct: 305 EKGNVMITSQNHGFAADEATLPANIKVTHKSLFDGSLQGIHLTDKPAFSFQGHPEASPGP 364

Query: 361 HDAAPLFDHFIELIEQYRKTAK 382
           +DAAPLFDHFIELIEQYR+ AK
Sbjct: 365 NDAAPLFDHFIELIEQYRQNAK 386


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 551
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 386
Length adjustment: 30
Effective length of query: 352
Effective length of database: 356
Effective search space:   125312
Effective search space used:   125312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate 7023737 Shewana3_0967 (carbamoyl phosphate synthase small subunit (RefSeq))
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.32232.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32232.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.