Alignments for a candidate for asp-kinase in Shewanella sp. ANA-3

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate 7023909 Shewana3_1129 aspartate kinase (RefSeq)

Query= BRENDA::O69077
         (412 letters)



>FitnessBrowser__ANA3:7023909
          Length = 418

 Score =  343 bits (881), Expect = 4e-99
 Identities = 197/408 (48%), Positives = 275/408 (67%), Gaps = 8/408 (1%)

Query: 3   LIVQKFGGTSVGTVERIEQVAEKVKKFREAGDDVVVVVSAMSGETNRLIGLANQIMEQPV 62
           L V+KFGGTSVG++ERIE VAE++ K    G+  V+V+SAM+GETNRL  LA QI  +  
Sbjct: 12  LFVKKFGGTSVGSIERIEVVAEQIAKSAHNGELQVLVLSAMAGETNRLFALAAQIDPRAS 71

Query: 63  PRELDVMVSTGEQVTIALLSMALIKRGVPAVSYTGNQVRILTDSAHTKARILHIDDTHIR 122
            RELD++VSTGEQ++IAL++MAL +RG+ A S TG+QV+I T+S   +A I  +D  ++ 
Sbjct: 72  ARELDMLVSTGEQISIALMAMALQRRGINARSLTGDQVQIHTNSQFGRASIERVDTAYLT 131

Query: 123 ADLKAGRVVVVAGFQGVDGNGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTD 182
           + L  G V +VAGFQG+D NG++TTLGRGGSDTT VALAAALKADECQI+TDV GV+TTD
Sbjct: 132 SLLNDGIVPIVAGFQGIDPNGDVTTLGRGGSDTTAVALAAALKADECQIFTDVPGVFTTD 191

Query: 183 PRVVPQARRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYNVPLRVLHSFQEGPGTLITI 242
           P +   ARRLD I F+ MLEMA LG+KVL   +VE+A ++ VPLRVL SF+ G GTLI  
Sbjct: 192 PNIDSSARRLDVIGFDVMLEMAKLGAKVLHPDSVEYAQRFKVPLRVLSSFEAGHGTLIQF 251

Query: 243 DDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMI----VQN 298
            DE E      + GIA N+  A LTI+G+  +      +L  ++   ++V+ I    +  
Sbjct: 252 GDESELAMAASVQGIAINKALATLTIKGLFTSSEHYQALLACLARLEIDVEFITPLKLNE 311

Query: 299 VAHDNTTDFTFTVHRND-YLNALEILKQTAANIGAREAIGDTNIAKVSIVGVGMRSHAGV 357
            +      F     + D  L+ LE+L +   ++   + I +   AKVS+VG G+++  G+
Sbjct: 312 TSAAECVSFMLAEAKVDILLHELELLSE---SLDLGQLIVERQRAKVSLVGKGLQAKVGL 368

Query: 358 ASRMFEALAKESINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELD 405
            ++M + L  E+I+ +++STSE K+S VI+E+ L  AVRALH AFEL+
Sbjct: 369 LTKMLDVLGNETIHAKLLSTSESKLSTVIDERDLHKAVRALHHAFELN 416


Lambda     K      H
   0.317    0.133    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 421
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 418
Length adjustment: 31
Effective length of query: 381
Effective length of database: 387
Effective search space:   147447
Effective search space used:   147447
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate 7023909 Shewana3_1129 (aspartate kinase (RefSeq))
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.2981.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2981.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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