Alignments for a candidate for thrB in Shewanella sp. ANA-3

Align homoserine kinase; EC 2.7.1.39 (characterized)
to candidate 7023928 Shewana3_1140 homoserine kinase (RefSeq)

Query= CharProtDB::CH_002113
         (310 letters)



>FitnessBrowser__ANA3:7023928
          Length = 312

 Score =  341 bits (875), Expect = 1e-98
 Identities = 169/305 (55%), Positives = 218/305 (71%), Gaps = 2/305 (0%)

Query: 4   VYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAET-FSLNNLGRFADKLPSEPRE 62
           VYAPAS  N+ VGFD+LGAA+ P+DG+LLGD VT+ AA+   SL  +G +A KLPS P E
Sbjct: 5   VYAPASMGNVGVGFDLLGAALAPIDGSLLGDRVTIAAADAGVSLTQVGAWAHKLPSNPEE 64

Query: 63  NIVYQCWERFCQELGKQIP-VAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLNDT 121
           NIV+QC   F + LGK+   VA+TLEKN+P+GSGLGSSA SVVAAL A+NEH  +P +  
Sbjct: 65  NIVHQCAVFFLKALGKENQGVALTLEKNLPVGSGLGSSASSVVAALYALNEHFERPYDKQ 124

Query: 122 RLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGIK 181
            LL LMGE EG+ISGS+HYDNVAPC+LGGMQLM+     I + +P F +W WV+AYPGI 
Sbjct: 125 ALLELMGEFEGKISGSVHYDNVAPCYLGGMQLMLNVPGAICEPIPSFKQWYWVVAYPGIS 184

Query: 182 VSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLPG 241
           +STA  R ++P QY +   I  GR+L+ F+HA Y +  +LA +++KDV+AEPYR   +PG
Sbjct: 185 LSTAMMRKLMPEQYDKSVAIDFGRYLSAFVHASYQQNAKLAIQVLKDVLAEPYRAAAIPG 244

Query: 242 FRQARQAVAEIGAVASGISGSGPTLFALCDKPETAQRVADWLGKNYLQNQEGFVHICRLD 301
           +  AR A+AE+G + +GISGSGPTLF++ D   TA     WL  +YL    GF H+CRLD
Sbjct: 245 YDNARAALAELGMLTTGISGSGPTLFSVTDNLVTANAAKAWLEAHYLTEAGGFAHVCRLD 304

Query: 302 TAGAR 306
             G R
Sbjct: 305 EQGTR 309


Lambda     K      H
   0.321    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 302
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 312
Length adjustment: 27
Effective length of query: 283
Effective length of database: 285
Effective search space:    80655
Effective search space used:    80655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate 7023928 Shewana3_1140 (homoserine kinase (RefSeq))
to HMM TIGR00191 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.26736.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26736.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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