Alignments for a candidate for trpD_1 in Shewanella sp. ANA-3

Align Anthranilate synthase component 2; AS; ASII; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 (characterized)
to candidate 7024327 Shewana3_1519 anthranilate synthase component II (RefSeq)

Query= SwissProt::P00900
         (193 letters)



>FitnessBrowser__ANA3:7024327
          Length = 202

 Score =  205 bits (521), Expect = 5e-58
 Identities = 104/185 (56%), Positives = 133/185 (71%), Gaps = 1/185 (0%)

Query: 4   ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQP-VLMLSPGPGTPS 62
           + LLDN DSFTYNLVDQ R+ G +VVIYRN + A+ I  +L    +P  L+LSPGPG P 
Sbjct: 3   LYLLDNFDSFTYNLVDQFRSLGCEVVIYRNDVAADYIANKLLAETEPSALVLSPGPGAPH 62

Query: 63  EAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAG 122
           EAG M  L+ ++ G++P++GICLGHQA+VE YGG+V +A  ++HGKAS   H+G G+FA 
Sbjct: 63  EAGSMMSLIDKVAGKVPMLGICLGHQAMVEYYGGKVERAPFVVHGKASPTFHNGTGVFAN 122

Query: 123 MANPLPVARYHSLVGSNIPADLTVNARSGEMVMAVRDDRRRVCGFQFHPESILTTHGARL 182
           + +PLPVARYHSLV + +P  L V A + EM MA+     R  GFQFHPESILTT G+ L
Sbjct: 123 LPSPLPVARYHSLVATKVPDCLEVIATTEEMPMAILHAEHRAVGFQFHPESILTTLGSTL 182

Query: 183 LEQTL 187
           L QTL
Sbjct: 183 LTQTL 187


Lambda     K      H
   0.322    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 137
Number of extensions: 6
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 202
Length adjustment: 20
Effective length of query: 173
Effective length of database: 182
Effective search space:    31486
Effective search space used:    31486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate 7024327 Shewana3_1519 (anthranilate synthase component II (RefSeq))
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.4722.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4722.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.