Alignments for a candidate for cysK in Shewanella sp. ANA-3

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate 7024369 Shewana3_1561 cysteine synthase (RefSeq)

Query= BRENDA::P0ABK5
         (323 letters)



>FitnessBrowser__ANA3:7024369
          Length = 322

 Score =  483 bits (1242), Expect = e-141
 Identities = 244/320 (76%), Positives = 275/320 (85%), Gaps = 1/320 (0%)

Query: 1   MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 60
           MSKIFEDNS TIG+TPLVRLNR+  G++LAKVE+RNPSFSVKCRIGANMIWDAEK+G+L 
Sbjct: 1   MSKIFEDNSYTIGNTPLVRLNRVSQGKVLAKVEARNPSFSVKCRIGANMIWDAEKKGLLT 60

Query: 61  PGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGM 120
              EL+EPTSGNTGIALAYVAAARGYKLTLTMP TMS+ERRKLLKALGANLVLTEGAKGM
Sbjct: 61  KDHELIEPTSGNTGIALAYVAAARGYKLTLTMPNTMSLERRKLLKALGANLVLTEGAKGM 120

Query: 121 KGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGTGG 180
           KGAI KAEEI  S PEKY++LQQF+NPANPEIHEKTTGPEIW DTDG VDVF+AGVGTGG
Sbjct: 121 KGAIDKAEEIRQSAPEKYIMLQQFNNPANPEIHEKTTGPEIWNDTDGAVDVFVAGVGTGG 180

Query: 181 TLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLD 240
           T+TGVSRY+K   GK  + SVAVEP DSPVI Q LAG  ++PGPHKIQGIGAGFIP NLD
Sbjct: 181 TITGVSRYLKKVAGKA-ITSVAVEPADSPVITQTLAGLPVQPGPHKIQGIGAGFIPGNLD 239

Query: 241 LKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILP 300
           L+L+D+V  +TN+EAI  ARRLM+EEGIL GISSGAAV AA ++     F +KNIVVILP
Sbjct: 240 LELIDRVETVTNDEAIDMARRLMQEEGILVGISSGAAVVAANRIAALPEFADKNIVVILP 299

Query: 301 SSGERYLSTALFADLFTEKE 320
           S+ ERYLS+ LF   F ++E
Sbjct: 300 SAAERYLSSVLFQGQFGDEE 319


Lambda     K      H
   0.313    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 414
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 322
Length adjustment: 28
Effective length of query: 295
Effective length of database: 294
Effective search space:    86730
Effective search space used:    86730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate 7024369 Shewana3_1561 (cysteine synthase (RefSeq))
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.4940.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4940.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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