Alignments for a candidate for hisH in Shewanella sp. ANA-3

Align IGP synthase glutamine amidotransferase subunit; EC 2.4.2.- (characterized)
to candidate 7024672 Shewana3_1850 imidazole glycerol phosphate synthase subunit HisH (RefSeq)

Query= CharProtDB::CH_024511
         (196 letters)



>FitnessBrowser__ANA3:7024672
          Length = 216

 Score =  195 bits (495), Expect = 6e-55
 Identities = 104/207 (50%), Positives = 140/207 (67%), Gaps = 12/207 (5%)

Query: 2   NVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFLPGVGTAQAAMDQVRERE 61
           +VVI+DTGCANL+SV+ A  R G +  V+ D   +  A ++ LPGVG+A AAM  + E+ 
Sbjct: 9   DVVIIDTGCANLSSVRFAFERLGAKVLVTDDKASIKAAKRVVLPGVGSAGAAMASLTEKA 68

Query: 62  LFDLIKACTQPVLGICLGMQLLGRRSEESNGVDL----LGIIDEDVPKMTDF-----GLP 112
           L +LI+  TQPVLG+CLGMQ+L   S+E  G  L    LGII  ++ ++        GLP
Sbjct: 69  LVELIQGLTQPVLGVCLGMQMLTLLSKERGGQALDCQCLGIIPTEIDELDRQILKAEGLP 128

Query: 113 LPHMGWNRVY---PQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYGEPFTAAVQK 169
           LPHMGWN++    P   + LF G+  G+Y YFVHSY  P++ +T+AQC YGE F+AA+ K
Sbjct: 129 LPHMGWNQLTFSNPSQVHPLFTGVPAGSYVYFVHSYRAPLSDYTLAQCRYGEDFSAAIGK 188

Query: 170 DNFYGVQFHPERSGAAGAKLLKNFLEM 196
           DNF GVQFHPE+S A GA++L NFL+M
Sbjct: 189 DNFMGVQFHPEKSAAVGAQILGNFLKM 215


Lambda     K      H
   0.322    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 152
Number of extensions: 5
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 216
Length adjustment: 21
Effective length of query: 175
Effective length of database: 195
Effective search space:    34125
Effective search space used:    34125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate 7024672 Shewana3_1850 (imidazole glycerol phosphate synthase subunit HisH (RefSeq))
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.29940.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29940.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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