Alignments for a candidate for hisD in Shewanella sp. ANA-3

Align Histidinol dehydrogenase; HDH; EC 1.1.1.23 (characterized)
to candidate 7024675 Shewana3_1853 histidinol dehydrogenase (RefSeq)

Query= SwissProt::P10370
         (434 letters)



>FitnessBrowser__ANA3:7024675
          Length = 433

 Score =  482 bits (1240), Expect = e-140
 Identities = 251/433 (57%), Positives = 316/433 (72%), Gaps = 8/433 (1%)

Query: 6   LIDWNSCSPEQQRALLTRPAISASDSITRTVSDILDNVKTRGDDALREYSAKFD---KTE 62
           ++ W + S ++Q+A L R  +     + ++V  I+D V +RGD AL+E++ KFD      
Sbjct: 3   ILTWAALSVDEQKAALQRSPLIGDSGLEQSVRAIVDAVASRGDAALKEFNQKFDGFNSAN 62

Query: 63  VTALRVTPEEIAAAGARLSDELKQAMTAAVKNIETFHSAQTLPPVDVETQPGVRCQQVTR 122
           + +LR++  EI+AA AR+S ELK A+  A+ NI+ FHSAQ   P+D+ETQ GVRC+  + 
Sbjct: 63  IDSLRLSESEISAASARVSAELKAAIAQAMANIDVFHSAQQFRPIDIETQAGVRCELRSE 122

Query: 123 PVSSVGLYIPGGSAPLFSTVLMLATPARIAGCQKVVLCSPPPIADEILYAAQLCGVQEIF 182
           P+  VGLYIPGGSAPL STV+MLA PA+IAGC+K VL SPPPI D I+YAA  CG+ EI+
Sbjct: 123 PIEKVGLYIPGGSAPLISTVMMLALPAKIAGCEKRVLVSPPPINDAIVYAANACGITEIY 182

Query: 183 NVGGAQAIAALAFGSESVPKVDKIFGPGNAFVTEAKRQVSQRLDG---AAIDMPAGPSEV 239
            VGGAQAIAALAFG+ES+P VDKIFGPGN +VTEAKR VSQ  DG    +IDMPAGPSEV
Sbjct: 183 QVGGAQAIAALAFGTESIPSVDKIFGPGNRYVTEAKRLVSQ--DGRCTVSIDMPAGPSEV 240

Query: 240 LVIADSGATPDFVASDLLSQAEHGPDSQVILLTPDADIARKVAEAVERQLAELPRADTAR 299
           LVIADS A   F+A+DLLSQAEHGPDSQVIL+T    +A+ V +A+  QLA LPR + A 
Sbjct: 241 LVIADSDANAQFIAADLLSQAEHGPDSQVILVTDSEPLAQAVNQALASQLAALPRQEIAT 300

Query: 300 QALSASRLIVTKDLAQCVAISNQYGPEHLIIQTRNARDLVDAITSAGSVFLGDWSPESAG 359
            AL  SR I+ KD+ +   +SN+YGPEHLIIQTR   D++  I +AGSVFLG ++PES G
Sbjct: 301 TALKGSRTILVKDMQEAALVSNRYGPEHLIIQTRFPGDVLKHIRAAGSVFLGAYTPESVG 360

Query: 360 DYASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKAGFSALASTIETLAAAERLTAH 419
           DYASGTNHVLPTYGY+   SSL LADF +R TVQELS  G   L   + TLA+ E L AH
Sbjct: 361 DYASGTNHVLPTYGYSRAVSSLSLADFSRRFTVQELSAKGLLGLGQAVMTLASNELLDAH 420

Query: 420 KNAVTLRVNALKE 432
           KNAV +R+ +LK+
Sbjct: 421 KNAVAIRLASLKD 433


Lambda     K      H
   0.315    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 498
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 433
Length adjustment: 32
Effective length of query: 402
Effective length of database: 401
Effective search space:   161202
Effective search space used:   161202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate 7024675 Shewana3_1853 (histidinol dehydrogenase (RefSeq))
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.6245.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6245.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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