Alignments for a candidate for cysE in Shewanella sp. ANA-3

Align Serine acetyltransferase; SAT; EC 2.3.1.30 (characterized)
to candidate 7025119 Shewana3_2282 serine O-acetyltransferase (RefSeq)

Query= SwissProt::Q06750
         (217 letters)



>FitnessBrowser__ANA3:7025119
          Length = 273

 Score =  217 bits (553), Expect = 1e-61
 Identities = 108/202 (53%), Positives = 145/202 (71%), Gaps = 16/202 (7%)

Query: 6   LKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLARLISQVSRFFT 65
           LKEDI++++ +DPAARS FE+++ Y G+HAIW HRI+H L+KR +  +AR +S  SR+ T
Sbjct: 7   LKEDIESIYHRDPAARSAFEILVNYPGMHAIWLHRISHKLWKRDWRLMARCLSTFSRWLT 66

Query: 66  GIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIKDDA 125
           G+EIHPGATIG RFFIDHGMGVVIGET EIG++ T++ GVTLGGT  + GKRHPT+ ++ 
Sbjct: 67  GVEIHPGATIGDRFFIDHGMGVVIGETAEIGDDCTLYHGVTLGGTTWQAGKRHPTLGNNV 126

Query: 126 LIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVV-----QNGKKVRRDL 180
           ++  GAK+LG IT+ +G+++G+ SVV+ DVP  +TVVGIPGRVV         K  RR  
Sbjct: 127 VVGAGAKILGPITMHDGARVGSNSVVVKDVPKDTTVVGIPGRVVATPSPQSKEKSERRSA 186

Query: 181 NHQ-----------DLPDPVAD 191
             +           D PDPVA+
Sbjct: 187 MAKKYGFDAYAVSPDNPDPVAN 208


Lambda     K      H
   0.323    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 232
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 273
Length adjustment: 23
Effective length of query: 194
Effective length of database: 250
Effective search space:    48500
Effective search space used:    48500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)

Align candidate 7025119 Shewana3_2282 (serine O-acetyltransferase (RefSeq))
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.30768.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30768.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.