Alignments for a candidate for cmutase in Shewanella sp. ANA-3

Align P-protein; EC 4.2.1.51; EC 5.4.99.5 (characterized)
to candidate 7025858 Shewana3_3007 chorismate mutase / prephenate dehydratase (RefSeq)

Query= CharProtDB::CH_024084
         (386 letters)



>FitnessBrowser__ANA3:7025858
          Length = 667

 Score =  411 bits (1057), Expect = e-119
 Identities = 213/386 (55%), Positives = 278/386 (72%), Gaps = 7/386 (1%)

Query: 1   MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLI 60
           M    PL   RE+I+ LD +LL+LLAERR L++EV ++K +  RP+RD  RE++LL RL+
Sbjct: 1   MQKPQPLNQTREQITHLDNELLSLLAERRRLSLEVARSKEVDVRPIRDTQREKELLARLV 60

Query: 61  TLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPHSAR----IAFLGPKGSYS 116
           T G+   LDAHY+  L+Q IIEDSVL QQA L     + NP + +    IA+LG +GSYS
Sbjct: 61  TAGREKGLDAHYVISLYQSIIEDSVLNQQAYLH---GRANPETQKQQYCIAYLGARGSYS 117

Query: 117 HLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIENTSSGAINDVYDLLQHT 176
           +LAA +Y  R   + ++ GC  F +I   VE+G ADY  +PIENTSSG+IN+VYD+LQHT
Sbjct: 118 YLAASRYCQRRQVEMLDLGCQSFDEIVQAVESGHADYGFLPIENTSSGSINEVYDVLQHT 177

Query: 177 SLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSKFLNRYPHWKIEYTESTSA 236
           SLSIVGE T+ + HCLL    + LS I TVY+HPQP  QCS++L+++   ++EY  S++ 
Sbjct: 178 SLSIVGETTIEVSHCLLGKPGSKLSDIKTVYAHPQPISQCSRYLSQHKDLRLEYCSSSAE 237

Query: 237 AMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQRQNFTRFVVLARKAINVSDQVPA 296
           AMEKV Q+     AA+GS  GG LY L+ +E   ANQ+ N +RF+V+ARKA+ V +Q+PA
Sbjct: 238 AMEKVNQSADNSAAAIGSTEGGALYQLESIESGLANQKINQSRFIVVARKAVAVPEQLPA 297

Query: 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTRLESRPIHGNPWEEMFYLDIQANLESAEMQ 356
           KTTL+MATGQ+AGALVEALLVL+ H L M++LESRPI G PWEEMFYLDI AN+ S  MQ
Sbjct: 298 KTTLIMATGQKAGALVEALLVLKAHQLNMSKLESRPIPGTPWEEMFYLDIDANISSEAMQ 357

Query: 357 KALKELGEITRSMKVLGCYPSENVVP 382
           + LK+L  ITR +KVLGCYP E V P
Sbjct: 358 QGLKQLERITRFIKVLGCYPCETVKP 383


Lambda     K      H
   0.318    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 529
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 667
Length adjustment: 34
Effective length of query: 352
Effective length of database: 633
Effective search space:   222816
Effective search space used:   222816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate 7025858 Shewana3_3007 (chorismate mutase / prephenate dehydratase (RefSeq))
to HMM TIGR01797 (chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.18932.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18932.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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