Alignments for a candidate for cmutase in Shewanella sp. ANA-3

Align fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) (characterized)
to candidate 7025863 Shewana3_3012 bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq)

Query= ecocyc::CHORISMUTPREPHENDEHYDROG-MONOMER
         (373 letters)



>FitnessBrowser__ANA3:7025863
          Length = 379

 Score =  423 bits (1088), Expect = e-123
 Identities = 212/368 (57%), Positives = 270/368 (73%), Gaps = 1/368 (0%)

Query: 4   ELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPIYVPEREASMLASRRAEAEA 63
           EL  LR  ID VD+ LL+LL KRL+LVA+VG VK   GLPIY P+REA+MLA RR EA+ 
Sbjct: 8   ELEHLRGLIDGVDQQLLHLLRKRLDLVAQVGTVKHAAGLPIYAPQREAAMLAKRREEAKT 67

Query: 64  LGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVVIVGGGGQMGRLFEKMLTLSGY 123
           +G+ P LIED+LRR+MRESY +E D GFK +   L  VVIVGG GQ+G LF++ML+LSGY
Sbjct: 68  MGIAPQLIEDILRRLMRESYLNEKDVGFKQVKNDLGSVVIVGGKGQLGGLFQQMLSLSGY 127

Query: 124 QVRILEQHDWDRAADIVADAGMVIVSVPIHVTEQVIG-KLPPLPKDCILVDLASVKNGPL 182
           QV++L++ DW +A  + ADAG+V+V+VPI +T  +I  KL  LP++CIL DL S+K  P+
Sbjct: 128 QVKVLDKDDWQQAETLFADAGLVLVTVPIAITCDIIREKLTQLPQECILADLTSIKTEPM 187

Query: 183 QAMLVAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGRKPEAYQWFLEQIQVWGARLHRISA 242
            AML AH GPV+G HPMFGPD GSLAKQVVV C GR  + YQW LEQI +WGAR+     
Sbjct: 188 NAMLAAHKGPVVGFHPMFGPDVGSLAKQVVVVCHGRGADKYQWLLEQIGIWGARIVEAEP 247

Query: 243 VEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQL 302
             HD  M  +QA+RHF+TF YGL+L +E   +E LL  SSPIYRLELAMVGRLFAQ P+L
Sbjct: 248 ERHDNAMQLVQAMRHFSTFVYGLNLCKEEADIETLLQFSSPIYRLELAMVGRLFAQSPEL 307

Query: 303 YADIIMSSERNLALIKRYYKRFGEAIELLEQGDKQAFIDSFRKVEHWFGDYAQRFQSESR 362
           YADII + + +   I  Y   + EA+ELL++GD+ AFI  F+ V  WFGD+A +FQ ESR
Sbjct: 308 YADIIFAQQDSQHAIGDYLDNYREALELLKRGDRDAFISQFQTVAKWFGDFAPQFQRESR 367

Query: 363 VLLRQAND 370
           ++L+  +D
Sbjct: 368 MMLQSVSD 375


Lambda     K      H
   0.322    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 390
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 379
Length adjustment: 30
Effective length of query: 343
Effective length of database: 349
Effective search space:   119707
Effective search space used:   119707
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate 7025863 Shewana3_3012 (bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq))
to HMM TIGR01799 (tyrA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.21992.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21992.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.