Alignments for a candidate for cysK in Shewanella sp. ANA-3

Align Cysteine synthase B; CSase B; O-acetylserine (thiol)-lyase B; OAS-TL B; O-acetylserine sulfhydrylase B; EC 2.5.1.47 (characterized)
to candidate 7026046 Shewana3_3188 cysteine synthase B (RefSeq)

Query= SwissProt::P16703
         (303 letters)



>FitnessBrowser__ANA3:7026046
          Length = 292

 Score =  384 bits (986), Expect = e-111
 Identities = 197/291 (67%), Positives = 238/291 (81%), Gaps = 6/291 (2%)

Query: 3   TLEQTIGNTPLVKLQRMGPDNGSE-VWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG 61
           T+E  IG TPLV+LQR+  D GS  V LKLEGNNPAGSVKDRAAL+MI++AE R EI PG
Sbjct: 6   TIEACIGQTPLVRLQRL--DCGSSTVLLKLEGNNPAGSVKDRAALNMIIQAELRQEIAPG 63

Query: 62  DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
           D LIEATSGNTGIALAM AA+KGY+M L+MP N +QER+ AM+AYGAEL+LV     ME 
Sbjct: 64  DTLIEATSGNTGIALAMAAAIKGYKMILIMPSNSTQERKDAMQAYGAELLLV---DNMEA 120

Query: 122 ARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 181
           ARDLAL++  +G+GK+LDQFNN DN  AH+ TTGPEIWQQ+ G+ITHFVSSMGTTGTI G
Sbjct: 121 ARDLALDLQAQGKGKVLDQFNNQDNANAHFQTTGPEIWQQSQGKITHFVSSMGTTGTIMG 180

Query: 182 VSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTM 241
           VS++++ ++  +TIVGLQP +GSSIPGIRRWP EYLPGIF+A+ VD V+DI ++DA+   
Sbjct: 181 VSKYLKSRNPDITIVGLQPADGSSIPGIRRWPQEYLPGIFDAARVDAVMDIEEQDAKAMA 240

Query: 242 RELAVREGIFCGVSSGGAVAGALRVAKANPDAVVVAIICDRGDRYLSTGVF 292
           R LA  EGI  GVSSGGAV  AL +A+ NP +VVVAI+CDRGDRYLS+G+F
Sbjct: 241 RTLAREEGICAGVSSGGAVFAALEIARQNPGSVVVAIVCDRGDRYLSSGLF 291


Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 326
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 292
Length adjustment: 26
Effective length of query: 277
Effective length of database: 266
Effective search space:    73682
Effective search space used:    73682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate 7026046 Shewana3_3188 (cysteine synthase B (RefSeq))
to HMM TIGR01138 (cysM: cysteine synthase B (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.9571.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9571.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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