Align amino-acid acetyltransferase (characterized)
to candidate 7026634 Shewana3_3767 N-acetylglutamate synthase (RefSeq)
Query= CharProtDB::CH_024150 (443 letters) >FitnessBrowser__ANA3:7026634 Length = 445 Score = 596 bits (1537), Expect = e-175 Identities = 286/438 (65%), Positives = 357/438 (81%) Query: 5 RKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSSIVNDIGLLHSLGIRLVVVYG 64 R TELV+GFRHS PY+N HRGKTFV+MLGGEA+ F I+ND+ LLHSLGI++V+VYG Sbjct: 8 RTTELVDGFRHSAPYVNAHRGKTFVVMLGGEALAQNQFRGILNDVALLHSLGIKVVLVYG 67 Query: 65 ARPQIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAGTLQLDITARLSMSLNNTPLQGA 124 ARPQIDA LAA+ EP YH+ +R+TD +L+++KQ AG LQ DITARLSMSL+NTP+QGA Sbjct: 68 ARPQIDAALAANGIEPAYHEGVRITDEDSLKVIKQVAGALQFDITARLSMSLSNTPMQGA 127 Query: 125 HINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDAIHRQLDSGAIVLMGPVAVSVTGES 184 IN+VSGNF+IAQPLGVD+GVD+C SG++RRID + RQLD+ IVLMGP+A SVTGES Sbjct: 128 QINLVSGNFVIAQPLGVDNGVDFCLSGKVRRIDTQGLKRQLDNHCIVLMGPIAASVTGES 187 Query: 185 FNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDDGDIVSELFPNEAQARVEAQEEKGDYN 244 FNLT+EEIATQ+AIKLKA+KMIGF S G+ + +GD+++EL PN+AQ + E+G Sbjct: 188 FNLTAEEIATQVAIKLKADKMIGFSSQNGILDRNGDVIAELMPNDAQNILTKLAEQGSAC 247 Query: 245 SGTVRFLRGAVKACRSGVRRCHLISYQEDGALLQELFSRDGIGTQIVMESAEQIRRATIN 304 GT+ FL+ ++ ACR+GV RCHL+SY +DGALLQELFSR+GIGTQIV ESAE++RRA+I+ Sbjct: 248 VGTMAFLKASIDACRNGVPRCHLVSYLDDGALLQELFSREGIGTQIVTESAERLRRASIS 307 Query: 305 DIGGILELIRPLEQQGILVRRSREQLEMEIDKFTIIQRDNTTIACAALYPFPEEKIGEMA 364 DIGG+L LIRPLE+QGILVRRSREQLE+EI++F +I+RD I CAALYPF E+ GE A Sbjct: 308 DIGGVLNLIRPLEEQGILVRRSREQLEIEIEQFMLIERDGLVIGCAALYPFEEDNAGEFA 367 Query: 365 CVAVHPDYRSSSRGEVLLERIAAQAKQSGLSKLFVLTTRSIHWFQERGFTPVDIDLLPES 424 C+ VHPDYR + RG +LL+ I QA+ G S+LF LTTRSIHWF E GF D++ LP+ Sbjct: 368 CLVVHPDYRDADRGSLLLKNIIGQARSRGYSRLFALTTRSIHWFLEHGFVIEDVEALPQK 427 Query: 425 KKQLYNYQRKSKVLMADL 442 KKQLYNYQR+SK+L DL Sbjct: 428 KKQLYNYQRRSKILALDL 445 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 611 Number of extensions: 14 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 443 Length of database: 445 Length adjustment: 32 Effective length of query: 411 Effective length of database: 413 Effective search space: 169743 Effective search space used: 169743 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate 7026634 Shewana3_3767 (N-acetylglutamate synthase (RefSeq))
to HMM TIGR01890 (argA: amino-acid N-acetyltransferase (EC 2.3.1.1))
../bin/blast/fastacmd -i /tmp/list.16531.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16531.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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