Alignments for a candidate for argI in Shewanella sp. ANA-3

Align Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 (characterized)
to candidate 7026771 Shewana3_3903 ornithine carbamoyltransferase (RefSeq)

Query= SwissProt::Q9K4Y9
         (301 letters)



>FitnessBrowser__ANA3:7026771
          Length = 301

 Score =  404 bits (1039), Expect = e-117
 Identities = 190/299 (63%), Positives = 242/299 (80%)

Query: 1   MENLLSVKDLSKQQILDLLALAKAVKANPAEYSQALAGKSIVTIYEKPSLRTRVTFDIGI 60
           M++LLS+K+L++QQ+LDL+ LAK +KANPAEY  AL GKS+V ++EKPSLRTRV+FDIGI
Sbjct: 1   MKHLLSIKELTQQQLLDLITLAKTIKANPAEYRHALDGKSVVMLFEKPSLRTRVSFDIGI 60

Query: 61  HKLGGHAVYLDAQNGAIGERETVKDFAANISRWADAIVARVVSHKTLEGLVEHGSVPVVN 120
           +KLGGH +YLD QNGA+G+RE+V DFA+N+S WADAIVAR  SHKT+E L E G+VPV+N
Sbjct: 61  NKLGGHCLYLDQQNGALGKRESVADFASNLSCWADAIVARTFSHKTIEQLAEFGTVPVIN 120

Query: 121 SLCDLYHPCQALADFLTISEHYEDVSKVKLAYVGEGNNVTHSLMLTGAILGAEVTAVCPR 180
           +L DLYHPCQALADFLT++EH+E++S VKLAYVG+GNNVT+SLM   AILGA +T +CP 
Sbjct: 121 ALSDLYHPCQALADFLTLAEHFENISDVKLAYVGDGNNVTNSLMYCAAILGATMTVICPA 180

Query: 181 GSSPDAQIVKQAMALAEISGGKINVTDNLDDIVDYDVIYGDTWVSMGDDTPLAQVKEKYM 240
           G  PD  +V +   LA   GGK+ +T ++  I  +D IY DTW+SMGD TPLA++K+K+ 
Sbjct: 181 GHFPDGYVVAEVQELASRYGGKVVLTSDIGAIEGHDAIYTDTWISMGDPTPLAEIKDKFA 240

Query: 241 PYQINKALLMRTGIKHVLHCQPAHRELEITSEVMDGEHSLIFDQAENRMHAQNAVLLTL 299
           PYQ+NK L+ + G    +HC PAHR +E+T EVMDGE SLI  QAENRMHAQNAVL+TL
Sbjct: 241 PYQVNKGLMAKAGAHFFMHCLPAHRGVEVTDEVMDGEGSLILQQAENRMHAQNAVLITL 299


Lambda     K      H
   0.317    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 281
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 301
Length adjustment: 27
Effective length of query: 274
Effective length of database: 274
Effective search space:    75076
Effective search space used:    75076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate 7026771 Shewana3_3903 (ornithine carbamoyltransferase (RefSeq))
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.1603.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1603.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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