Alignments for a candidate for galU in Desulfovibrio vulgaris Miyazaki F

Align UTP--glucose-1-phosphate uridylyltransferase; Alpha-D-glucosyl-1-phosphate uridylyltransferase; General stress protein 33; GSP33; UDP-glucose pyrophosphorylase; UDPGP; Uridine diphosphoglucose pyrophosphorylase; EC 2.7.7.9 (characterized)
to candidate 8499282 DvMF_0060 UTP-glucose-1-phosphate uridylyltransferase (RefSeq)

Query= SwissProt::Q05852
         (292 letters)



>FitnessBrowser__Miya:8499282
          Length = 291

 Score =  284 bits (726), Expect = 2e-81
 Identities = 140/284 (49%), Positives = 198/284 (69%)

Query: 4   VRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIIEEAVEAGIEDIIIVTGKSKRA 63
           +RK +IP AG GTR LPATK +PKEMLP+ +KP +QY++EEA+ +GI D++ VT + K+ 
Sbjct: 3   IRKVVIPVAGWGTRSLPATKNIPKEMLPVYNKPVVQYVVEEAMRSGIGDVVFVTNRDKKI 62

Query: 64  IEDHFDYSPELERNLEEKGKTELLEKVKKASNLADIHYIRQKEPKGLGHAVWCARNFIGD 123
           IEDHFDY+ +LE  LE  GKTE+L +V++ + + +I  IRQK+  GLGHAV CAR+ + D
Sbjct: 63  IEDHFDYNLQLEGVLERAGKTEMLRQVREVAEMVNIISIRQKQQLGLGHAVLCARDVVRD 122

Query: 124 EPFAVLLGDDIVQAETPGLRQLMDEYEKTLSSIIGVQQVPEEETHRYGIIDPLTSEGRRY 183
           E FAV++GDD++   TPG++QL+D        +IGV +VP ++ +RYGII         +
Sbjct: 123 ESFAVMVGDDLMFGMTPGIKQLIDVAASERLPVIGVMEVPADKVNRYGIISGEEFAPGIF 182

Query: 184 QVKNFVEKPPKGTAPSNLAILGRYVFTPEIFMYLEEQQVGAGGEIQLTDAIQKLNEIQRV 243
           +V   VEKP  G APS LAI+GRYV TP+IF  LE+ + G GGEIQLTDA+Q L + + +
Sbjct: 183 KVNKLVEKPKLGEAPSRLAIVGRYVLTPDIFRCLEQMKPGHGGEIQLTDALQMLADDRGL 242

Query: 244 FAYDFEGKRYDVGEKLGFITTTLEFAMQDKELRDQLVPFMEGLL 287
            A    G R+D G+   ++T  + FA+QD+ELRD+LV  ++ LL
Sbjct: 243 LAVKIRGMRFDAGDWAEYLTANIYFALQDEELRDELVRQLKPLL 286


Lambda     K      H
   0.317    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 258
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 291
Length adjustment: 26
Effective length of query: 266
Effective length of database: 265
Effective search space:    70490
Effective search space used:    70490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate 8499282 DvMF_0060 (UTP-glucose-1-phosphate uridylyltransferase (RefSeq))
to HMM TIGR01099 (galU: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.19538.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19538.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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