Alignments for a candidate for gcvT in Desulfovibrio vulgaris Miyazaki F

Align Aminomethyltransferase; EC 2.1.2.10; Glycine cleavage system T protein (uncharacterized)
to candidate 8499572 DvMF_0341 glycine cleavage system T protein (RefSeq)

Query= curated2:Q31KT1
         (372 letters)



>FitnessBrowser__Miya:8499572
          Length = 362

 Score =  257 bits (657), Expect = 3e-73
 Identities = 162/363 (44%), Positives = 209/363 (57%), Gaps = 19/363 (5%)

Query: 9   LLSSPLHSVCTSAGARFTGFAGWELPLQFQ-GLMQEHLAVRERAGLFDISHMGKFQLRGS 67
           LL +PL +   +AGA+   FAGW++P+Q+  G++ EH+  RE A LFDI HMG+F LRG 
Sbjct: 4   LLQTPLSAWHRAAGAKMAPFAGWDMPIQYPTGIIAEHVQTRESAALFDICHMGEFTLRGP 63

Query: 68  GLRAALQRLLPSDLTTLLPGQAQYSVLLNEAGGCLDDLIVYWQGIVDGVEQAFLIVNAAT 127
           G R AL R +  +L TL PG+ +Y  LLNEAGG LDDLIVY        +   L+VN A 
Sbjct: 64  GARDALSRAVSHNLETLKPGRCRYGFLLNEAGGILDDLIVY----CVAEDDYMLVVNGAC 119

Query: 128 TDSDRLWLTEHLPPAIALLDLSQDLALVAIQGPQAIAFLQPLVSCDLAELPRFSHTVTSI 187
           T+SD   L   LP  +   D+S   A + +QGP++   L+ ++     +LP F       
Sbjct: 120 TESDFAALRSRLPAVLPFEDISARTAKLDLQGPKSFDVLEAVLGESFRDLPYFGFRSVVF 179

Query: 188 AGQPAFVARTGYTGEDGCEVMLPPAAAITLWQQLTA-AGVVPCGLGARDTLRLEAAMPLY 246
            G P  V+RTGYTGE G E+ LP   A  LW  L A   V P GLGARDTLRLE  +PLY
Sbjct: 180 GGAPLLVSRTGYTGELGVELYLPWDKAEALWTALLADERVKPAGLGARDTLRLEVGLPLY 239

Query: 247 GHELDTDTNPLEAGLGWVVHLDRNPDFLGR--DRLVQAKTNGLERRLVGLELPGRNIARH 304
           GH+LD    P EAG G +  L    D++G+  DR V+         LV L +PGR  ARH
Sbjct: 240 GHDLDDTHTPAEAGYGGM--LTNPADYVGKGADREVR-------EPLVALSIPGRRSARH 290

Query: 305 GYPVAIADTTV-GIVTSGSWSPTLSKAIALAYVPPALANLGQELWVEIRGKQVPATVVKR 363
           G  VA+ D TV G+VTSGS+ P+L  A+ALA V  A A       V+    ++ AT V  
Sbjct: 291 GDVVALPDGTVAGVVTSGSFCPSLGYAVALARVAAAHAE-APTFVVKAAKVELEATRVAL 349

Query: 364 PFY 366
           PFY
Sbjct: 350 PFY 352


Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 381
Number of extensions: 17
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 362
Length adjustment: 30
Effective length of query: 342
Effective length of database: 332
Effective search space:   113544
Effective search space used:   113544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate 8499572 DvMF_0341 (glycine cleavage system T protein (RefSeq))
to HMM TIGR00528 (gcvT: glycine cleavage system T protein (EC 2.1.2.10))

Software error:

../bin/blast/fastacmd -i /tmp/list.16654.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16654.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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