Alignments for a candidate for glpK in Desulfovibrio vulgaris Miyazaki F

Align Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 (characterized)
to candidate 8500046 DvMF_0809 glycerol kinase (RefSeq)

Query= SwissProt::O66131
         (496 letters)



>FitnessBrowser__Miya:8500046
          Length = 497

 Score =  632 bits (1631), Expect = 0.0
 Identities = 307/495 (62%), Positives = 378/495 (76%), Gaps = 1/495 (0%)

Query: 1   MNQYMLAIDQGTTSSRAILFNQKGEIVHMAQKEFTQYFPQPGWVEHNANEIWGSVLAVIA 60
           M +Y+LA+DQGTTSSRAILF+++G+I+ ++QKEFTQ +PQPGWVEHNANEI+ +    + 
Sbjct: 1   MTKYVLALDQGTTSSRAILFSREGDIIQISQKEFTQIYPQPGWVEHNANEIFDTESWGMR 60

Query: 61  SVLSEAQVKPEQVAGIGITNQRETTVVWEKDTGNPIYNAIVWQSRQTAGICDELKAKGYD 120
             L +A +   QV   GITNQRETTVVW+K +G P+YNAIVWQ R+TAG CDELKA+G  
Sbjct: 61  DCLKQAGIDGSQVVAAGITNQRETTVVWDKASGAPVYNAIVWQDRRTAGFCDELKARGLA 120

Query: 121 PLFRKKTGLLIDAYFSGTKVKWILDHVDGARERAERGELLFGTIDTWLIWKLSGGRVHVT 180
             FR+KTGL++DAYFSGTKV+WIL++V GAR +AE+GELLFGTIDTWLIW L+ G+VH T
Sbjct: 121 DTFRQKTGLVLDAYFSGTKVRWILENVPGARAKAEKGELLFGTIDTWLIWNLTKGKVHAT 180

Query: 181 DYSNASRTLMFNIHTLEWDDELLDILGVPKAMLPEVRPSSEVYAKTAPYHFFGVEVPIAG 240
           D SNASRTL+FNI+T +WDDELL ILGVP++MLP V  SSEV  +  P  F G  +PIAG
Sbjct: 181 DESNASRTLLFNINTGQWDDELLGILGVPRSMLPTVTRSSEVVGEIHP-EFLGKAIPIAG 239

Query: 241 AAGDQQAALFGQACFTEGMAKNTYGTGCFMLMNTGEKAVASKHGLLTTIAWGIDGKVEYA 300
            AGDQQAA +G AC   GMAKNTYGTGCFMLMNTG++  ASK+ LLTT+AW       +A
Sbjct: 240 NAGDQQAATYGNACLKPGMAKNTYGTGCFMLMNTGKEVHASKNNLLTTMAWATPSGRYFA 299

Query: 301 LEGSIFVAGSAIQWLRDGLRMIKTAADSETYAEKVESTDGVYVVPAFIGLGTPYWDSEVR 360
           LEGS+F+AG+ +QWLRDGL +IK A + E  A  V    GVY+VPAF GLG P+WD   R
Sbjct: 300 LEGSVFIAGAVVQWLRDGLGIIKDAPEVEQLALSVPDNGGVYLVPAFAGLGAPHWDQYAR 359

Query: 361 GAVFGLTRGTTKEHFIRATLESLAYQTKDVLAVMEADSGISLTTLRVDGGAVKNNFLMQF 420
           G + G+TRG+TK H  RA LES+A QT D++  M+ D+GI L  LR DGGA +NN LMQF
Sbjct: 360 GTMVGITRGSTKAHIARAALESIALQTLDIMDCMQKDAGIKLAALRADGGATRNNLLMQF 419

Query: 421 QSDLLAVPVERPVVNETTALGAAYLAGLAVGYWNSRDDIAAQWQLERRFEPKMDDDKRTM 480
           Q+D+L VPVERP V ETTALGAAYLAGLAVG+W S ++I A WQL+RRFEP M  + R  
Sbjct: 420 QADVLGVPVERPKVTETTALGAAYLAGLAVGFWKSEEEIEAMWQLDRRFEPNMSAETREK 479

Query: 481 LYDGWKKAVRAAMAF 495
           L   W++AV  A A+
Sbjct: 480 LVYDWQRAVERAKAW 494


Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 805
Number of extensions: 30
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 497
Length adjustment: 34
Effective length of query: 462
Effective length of database: 463
Effective search space:   213906
Effective search space used:   213906
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate 8500046 DvMF_0809 (glycerol kinase (RefSeq))
to HMM TIGR01311 (glpK: glycerol kinase (EC 2.7.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.11799.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11799.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.