Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate 8502127 DvMF_2838 aspartyl/glutamyl-tRNA amidotransferase subunit A (RefSeq)
Query= SwissProt::O06491 (485 letters) >FitnessBrowser__Miya:8502127 Length = 501 Score = 484 bits (1245), Expect = e-141 Identities = 247/472 (52%), Positives = 332/472 (70%), Gaps = 6/472 (1%) Query: 8 ITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSE 67 + E++ + ++E+ + RI A + + A L E A A A+ LD A G Sbjct: 13 LAEVRDRLARRELTAEQVTAACLDRITATEPAIAALLVTRGEGALAEARALDAA--GPDP 70 Query: 68 HGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEF 127 L+G+P+ VKD + T G RTTC S+IL +F P YDA V +L++A AV +GK NMDEF Sbjct: 71 AKPLWGVPLTVKDALTTAGTRTTCGSRILGDFTPHYDAFAVGKLREAGAVILGKTNMDEF 130 Query: 128 AMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCG 187 AMGSSTENSA+ T+NPWN+ VPGGSSGGSAA+VAAG+ SLG+DTGGSIRQPAS CG Sbjct: 131 AMGSSTENSAFGPTRNPWNVARVPGGSSGGSAASVAAGQCFGSLGTDTGGSIRQPASLCG 190 Query: 188 VVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVPD 247 VGLKPTYGRVSR+GLVA+ SSLDQIGP+TRTVED A LL I+G D D+TSA + V D Sbjct: 191 CVGLKPTYGRVSRFGLVAYGSSLDQIGPLTRTVEDAALLLSVIAGHDPRDATSATLPVDD 250 Query: 248 FLSSLTG--DIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKYA 305 ++ +L D+ G++I VP+E+ GEG+ E + AAL GLGAT +V LPH+ Y+ Sbjct: 251 YMGALASRKDLSGVRIGVPREFRGEGIDPEVSAACEAALDTARGLGATIVDVELPHTPYS 310 Query: 306 LATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTFA 365 +A YY+++ +EAS+NLARFDG+RYG R ++ +L DLY ++RAEGFG+EV+RRIMLGT+ Sbjct: 311 IAAYYIIAPAEASSNLARFDGVRYGRRAESPRDLADLYVRSRAEGFGDEVQRRIMLGTYV 370 Query: 366 LSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYAND 425 LSSGYYDAYY+KA +VR LI++D+E + DV+ GP +P A+ +GE T DPL MY D Sbjct: 371 LSSGYYDAYYRKAAQVRRLIREDYEKALSRCDVLCGPASPVTAWGLGELTSDPLKMYMMD 430 Query: 426 ILTIPVNLAGVPGISVPCGLA--DGLPLGLQIIGKHFDESTVYRVAHAFEQA 475 + T+ +NLAG+PG+ +P G+ G+P+GLQ++G+ F E + A+ A Sbjct: 431 VFTLSLNLAGLPGLCIPVGMGSRSGMPVGLQMLGRAFGEGDLLAAANVLSGA 482 Lambda K H 0.315 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 592 Number of extensions: 30 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 485 Length of database: 501 Length adjustment: 34 Effective length of query: 451 Effective length of database: 467 Effective search space: 210617 Effective search space used: 210617 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate 8502127 DvMF_2838 (aspartyl/glutamyl-tRNA amidotransferase subunit A (RefSeq))
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.17268.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17268.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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