Alignments for a candidate for garR in Desulfovibrio vulgaris Miyazaki F

Align 2-hydroxy-3-oxopropionate reductase; Tartronate semialdehyde reductase; TSAR; EC 1.1.1.60 (characterized)
to candidate 8502217 DvMF_2927 tartronate semialdehyde reductase (RefSeq)

Query= SwissProt::P0ABQ2
         (294 letters)



>FitnessBrowser__Miya:8502217
          Length = 299

 Score =  365 bits (936), Expect = e-106
 Identities = 192/293 (65%), Positives = 222/293 (75%)

Query: 2   KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVII 61
           ++GFIGLGIMG PM +NLLKAG+ +    RN + +  + A GA  A +  A+A   DV+I
Sbjct: 3   RIGFIGLGIMGAPMCRNLLKAGFPVTAYTRNGDKLRAMAAEGAAAAESPAAVAAASDVVI 62

Query: 62  TMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVS 121
           TMLPNSP V+ VALG  GI EGA PG ++ DMSSIAPLASREI+  L  K I MLDAPVS
Sbjct: 63  TMLPNSPEVRAVALGPGGIAEGAAPGCIVADMSSIAPLASREIAAELAKKSIRMLDAPVS 122

Query: 122 GGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNI 181
           GGEPKAIDGTLSVMVGG +  FD    + KAMA SVV  GE+GAGNVTKLANQ++VA NI
Sbjct: 123 GGEPKAIDGTLSVMVGGAQEDFDACLPVFKAMAASVVRVGEVGAGNVTKLANQIVVAGNI 182

Query: 182 AAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA 241
           AAMSEAL LAT+AG +PDLVYQAIRGGLAGSTVLDAKAP+VMD  F PGFRI LH KD+ 
Sbjct: 183 AAMSEALVLATRAGADPDLVYQAIRGGLAGSTVLDAKAPLVMDGRFTPGFRIRLHAKDMG 242

Query: 242 NALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKVEVTR 294
           N L+TS  +   LPL A +ME+MQ L ADGLG ADH AL  ++EKLA VEV R
Sbjct: 243 NVLETSRELHVPLPLAAQLMEVMQGLMADGLGDADHGALIRHWEKLAGVEVRR 295


Lambda     K      H
   0.316    0.133    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 329
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 299
Length adjustment: 26
Effective length of query: 268
Effective length of database: 273
Effective search space:    73164
Effective search space used:    73164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate 8502217 DvMF_2927 (tartronate semialdehyde reductase (RefSeq))
to HMM TIGR01505 (2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60))

Software error:

../bin/blast/fastacmd -i /tmp/list.10696.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10696.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.