Alignments for a candidate for thrB in Magnetospirillum magneticum AMB-1

Align homoserine kinase (EC 2.7.1.39) (characterized)
to candidate AMB_RS03910 AMB_RS03910 homoserine kinase

Query= reanno::Korea:Ga0059261_3253
         (319 letters)



>FitnessBrowser__Magneto:AMB_RS03910
          Length = 326

 Score =  265 bits (678), Expect = 9e-76
 Identities = 142/316 (44%), Positives = 192/316 (60%), Gaps = 8/316 (2%)

Query: 1   MAVYTQVSAEALAGFLARYDVGELVSAKGIAEGVENSNYLVETTRDRFILTLYEKRVEAA 60
           MAVYT+VS + L  F A YD+G++VS KGIAEGVEN+NYL++T +  +ILTLYEKRV   
Sbjct: 1   MAVYTEVSDDELEDFAAEYDIGQVVSCKGIAEGVENTNYLLQTDQGNYILTLYEKRVNPE 60

Query: 61  DLPYFMGLLDHLAAKGLPVPPAIKDRGGVEIQELNGRPACLIKFLSGISLSHPTPAQARA 120
           +LP+F+GL++HLAA GL  P  I  R G  ++ L GRPA ++ FL G+     T      
Sbjct: 61  ELPFFLGLMEHLAAHGLACPTPIHGRDGKALRTLCGRPAAIVSFLKGMWSRRITLGHCAE 120

Query: 121 AGEAMAQMHRAVADFPLDRPNSMGVDTWQPLFEKCGHSLDQIVPGLYDDLGFAIARVVPA 180
            G AMA MH A ADFPL R N++ V  W+PLFE       +I   L   +   +  +   
Sbjct: 121 LGPAMATMHLAGADFPLTRANNLSVAGWRPLFESIRPRAAEIKSDLAQSIEDELDYLEAH 180

Query: 181 WTRNDFDRCAIHADLFPDNVLMRG------DQVTGLIDFYFACTDIRVYDLAVMHSAWSF 234
           W R       IHADLFPDNV          D+++G IDFYFACTD+  YD+A+  +AW F
Sbjct: 181 WPRT-LPVGLIHADLFPDNVFFLADKAAGVDRMSGFIDFYFACTDVLAYDIAICLNAWCF 239

Query: 235 DAHGRNYDPAVGDALIAGYEASFPLTEVERAAFPTLAAGACIRFSLSRAWDWLNTPADAL 294
           +  G  ++      ++ GY    PL+  E  A P LA GA +RF L+R++DWL+TP  A+
Sbjct: 240 EEDGA-FNATKARLMLNGYRRVRPLSADELDALPLLARGAAMRFLLTRSYDWLHTPPGAM 298

Query: 295 VMRKDPLAYVRRLKHY 310
           V RKDP+ Y R+L+ +
Sbjct: 299 VKRKDPMEYYRKLRFH 314


Lambda     K      H
   0.323    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 310
Number of extensions: 8
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 326
Length adjustment: 28
Effective length of query: 291
Effective length of database: 298
Effective search space:    86718
Effective search space used:    86718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate AMB_RS03910 AMB_RS03910 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.7230.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7230.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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