Alignments for a candidate for gatB in Magnetospirillum magneticum AMB-1

Align glutamyl-tRNA^Gln amidotransferase subunit B (EC 6.3.5.7) (characterized)
to candidate AMB_RS07990 AMB_RS07990 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B

Query= metacyc::MONOMER-13956
         (476 letters)



>FitnessBrowser__Magneto:AMB_RS07990
          Length = 485

 Score =  431 bits (1108), Expect = e-125
 Identities = 220/474 (46%), Positives = 318/474 (67%), Gaps = 3/474 (0%)

Query: 2   NFETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGYPGVLPVLNKEAVEFAMK 61
           ++E VIGLEVH ++ +K+K+FS + T FGAE NTQ S ID G+PG+LPV+N+  VE A++
Sbjct: 11  DWEIVIGLEVHAQVISKAKLFSGAATEFGAEPNTQVSFIDAGFPGMLPVINEVCVEQAVR 70

Query: 62  AAMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGENGWIEIEV-GGKTKRIGITR 120
             + L  +I   + F RKNYFY D P+ YQISQ+D+PI   G + +++  G T+ +GI R
Sbjct: 71  TGLGLKAKINLTSVFARKNYFYADLPQGYQISQYDQPIVGEGELILDLPDGGTRTVGIER 130

Query: 121 LHLEEDAGKLTHT-GDGYSLVDFNRQGTPLVEIVSEPDIRTPEEAYAYLEKLKSIIQYTG 179
           LHLE+DAGK  H      S +D NR G  L+EIVS+PD+R+PEEA  YL KL+SI++Y  
Sbjct: 131 LHLEQDAGKSIHDMHPSKSFIDLNRSGVALMEIVSKPDLRSPEEAGLYLTKLRSILRYLE 190

Query: 180 VSDCKMEEGSLRCDANISLRPIGQEEFGTKTELKNLNSFAFVQKGLEHEEKRQEQVLLSG 239
             D  M+EGS+RCDAN+S+RP+G  E  T+ E+KN+NS  FVQ+ +E E +R   V  SG
Sbjct: 191 TCDGNMQEGSMRCDANVSVRPVGSTELRTRCEIKNVNSIRFVQQAIEFEARRHIDVYESG 250

Query: 240 FFIQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDLVELYIDDEWKERVKASIPELPDE 299
             I+QETR +D    +T  MR KE + DYRYFP+PDL+ L I+  + + +K+ +PELPDE
Sbjct: 251 GEIRQETRLFDSVKGETRSMRSKEHAHDYRYFPDPDLLPLVIEQSFVDGIKSGLPELPDE 310

Query: 300 RRKRYIEELGFAAYDAMVLTLTKEMADFFEETVQKGAEAKQASNWLMGEVSAYLNAEQKE 359
           ++ R++ E G  AYDA VL   K  A+FF ETV KG ++K A NW+MG+  A LNA  K 
Sbjct: 311 KKARFMAEYGLNAYDAGVLVAEKASAEFF-ETVAKGRDSKMACNWVMGDFFASLNATGKT 369

Query: 360 LADVALTPEGLAGMIKLIEKGTISSKIAKKVFKELIEKGGDAEKIVKEKGLVQISDEGVL 419
           + +  +T   L  +I LI+ GT+S ++AK VF  ++E G     +V+E+GL Q++D G +
Sbjct: 370 IENPPVTAANLGQLIDLIKDGTLSGRLAKDVFALMVETGKAPAVLVEERGLKQVTDTGAI 429

Query: 420 LKLVTEALDNNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKILLEEI 473
              V   +  NP  ++  K+GK   +G+  GQ+MK+++G+ANP MVN++L ++I
Sbjct: 430 EAAVDAVISANPDKVQQVKDGKTALLGWFTGQVMKSTQGKANPAMVNEMLSKKI 483


Lambda     K      H
   0.314    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 599
Number of extensions: 24
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 485
Length adjustment: 34
Effective length of query: 442
Effective length of database: 451
Effective search space:   199342
Effective search space used:   199342
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate AMB_RS07990 AMB_RS07990 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.19614.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19614.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.