Alignments for a candidate for argE in Magnetospirillum magneticum AMB-1

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate AMB_RS11990 AMB_RS11990 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__Magneto:AMB_RS11990
          Length = 404

 Score =  264 bits (674), Expect = 4e-75
 Identities = 149/372 (40%), Positives = 214/372 (57%), Gaps = 9/372 (2%)

Query: 5   EILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGY 64
           E + KL+   +     N  ++  +   L   G +V        +++NIFATIGP +  G 
Sbjct: 29  ETIAKLIAIDTTSYKTNLQLIDLVDKILSGLGASVRRTWDESKNKANIFATIGPSDVPGI 88

Query: 65  IISGHMDVVPAAETGWTSDPFRLRVEAD-RLYGRGTTDMKGFLAAVLAAVPKLAAMPLRR 123
           ++SGH DVVP     W+ DPF L V+AD +LYGRGT DMK F+A  LA  P+ AA PLR 
Sbjct: 89  VLSGHTDVVPVDGQDWSRDPFHL-VQADGKLYGRGTADMKSFIAICLAMAPQFAAAPLRM 147

Query: 124 PLHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRG 183
           P+H A SYDEE GC GV  +I  L  L  +P   I+GEPT M+A+  HKGK + R  V G
Sbjct: 148 PVHFAFSYDEEVGCVGVRRLIDDLAHLPVRPALCIVGEPTDMKAVIGHKGKKSVRCHVEG 207

Query: 184 RSGHSSRPDQGLNAIHGVAGVLTQAVAEADRL-VGGPFEHVFEPPYSSLQIGTVKGGQAV 242
              HS+   QG+NAI   A ++T+  A   R+   GPF+  ++PPY+++  GT++GG A+
Sbjct: 208 HECHSALNHQGVNAIEIAAEMVTRLRALQRRIREQGPFDLGYQPPYTTVHTGTMQGGTAL 267

Query: 243 NIIPDSCEVEFEARAISGVDPAELLAPVRKTAEAL------TTLGFEVEWQELSAYPALS 296
           NI+P SC  EFE R +   DP  L+A VR  A+ L       +    +   E ++ P L 
Sbjct: 268 NIVPKSCSFEFEIRNLPDHDPETLMAEVRGWAQDLVPEMLAVSEASGITLDEHNSTPGLG 327

Query: 297 LEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYILID 356
           ++       L+  L+G      V++ TEAGLFQ+AGI A++ GPG I +AH+PDE+I ++
Sbjct: 328 MDEMDAAVRLVCALSGANQTSKVAFTTEAGLFQQAGIPAVVIGPGSITQAHRPDEFITLE 387

Query: 357 ELMACRAMVEAL 368
           ++  C   +  L
Sbjct: 388 QVAQCEDFLRRL 399


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 393
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 404
Length adjustment: 30
Effective length of query: 344
Effective length of database: 374
Effective search space:   128656
Effective search space used:   128656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AMB_RS11990 AMB_RS11990 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.26870.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26870.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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