Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate AMB_RS12770 AMB_RS12770 dihydroxy-acid dehydratase
Query= SwissProt::Q1MIB2
(612 letters)
>FitnessBrowser__Magneto:AMB_RS12770
Length = 616
Score = 924 bits (2387), Expect = 0.0
Identities = 454/613 (74%), Positives = 516/613 (84%), Gaps = 4/613 (0%)
Query: 1 MPVYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV 60
MP YRSRT+THGRNM+GARGLWRATGM D+DFGKPIIA+ NSFTQFVPGHVHLKDLGQ+V
Sbjct: 1 MPAYRSRTSTHGRNMSGARGLWRATGMTDADFGKPIIAIANSFTQFVPGHVHLKDLGQMV 60
Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120
AREIE AGGVAKEF+TIA+DDGIAMGH GMLYSLPSRELIADSVEYMVNAHCADAMVCIS
Sbjct: 61 AREIEKAGGVAKEFDTIAIDDGIAMGHAGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120
Query: 121 NCDKITPGMLMASLRLNIPTVFVSGGPMEAGKVVMHGKTHALDLVDAMVAAADDKISDED 180
NCDKITPGMLMASLRLNIPT+F+SGGPMEAGKV G+THA+DL+DAM+ AD +SDE+
Sbjct: 121 NCDKITPGMLMASLRLNIPTIFISGGPMEAGKVTYQGETHAVDLIDAMIKGADQNVSDEE 180
Query: 181 VQTIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHLDRKRLFVEAGHLIV 240
E+ +CPTCGSCSGMFTANSMNCL EALGL LPGNG+ +ATH DRK LF+EAG IV
Sbjct: 181 ALAFEKESCPTCGSCSGMFTANSMNCLIEALGLGLPGNGTVVATHADRKELFLEAGRRIV 240
Query: 241 DLARRYYEQDDVKALPRTIASKQAFENAMTLDIAMGGSTNTVLHILAAAHEGEIDFTMAD 300
DLARR YE DD LPR+IA+ QAFENAMTLDIAMGGSTNTVLH+LAAA E + F M+D
Sbjct: 241 DLARRAYEGDDASVLPRSIATFQAFENAMTLDIAMGGSTNTVLHLLAAAQEAGVAFGMSD 300
Query: 301 IDALSRRVPCLSKVAPAKSDVHMEDVHRAGGIMSILGELDKGGLLNRDCPTVHAETLGDA 360
ID LSRRVPCL KVAP DVH+EDVHRAGGIM ILG+LD+GGL+NR+C T+HA TL +
Sbjct: 301 IDRLSRRVPCLCKVAPNVPDVHIEDVHRAGGIMGILGQLDRGGLINRECGTIHARTLAEG 360
Query: 361 IDRWDITRTNSETVRKFYRAAPGGIPTQVAFSQEARWDELDTDRENGVIRSVEHPFSKDG 420
+DRWDI+R+N V +FY+AAPGG+ T AFSQ RW E+D DR GVIRSV++ FSKDG
Sbjct: 361 LDRWDISRSNDPKVVEFYKAAPGGVRTTEAFSQSKRWAEVDKDRTAGVIRSVDNAFSKDG 420
Query: 421 GLAVLKGNLAIDGCIVKTAGVDESILKFSGPARVFESQDASVKAILANEVKAGDVVVIRY 480
GLAVL GNLA+DGCIVKTAGVD+ L FSGPA + ESQD +V IL +VK+GDVV++RY
Sbjct: 421 GLAVLFGNLALDGCIVKTAGVDDKNLTFSGPAVICESQDEAVAKILGGQVKSGDVVIVRY 480
Query: 481 EGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHASPEAANGGTIGL 540
EGP+GGPGMQEMLYPTSYLKS GLGK CALITDGRFSGGTSGLSIGH SPEAA GG IGL
Sbjct: 481 EGPRGGPGMQEMLYPTSYLKSMGLGKECALITDGRFSGGTSGLSIGHVSPEAAEGGAIGL 540
Query: 541 VREGDMIDIDIPNRTISLRVSETELAARRAEQDA---KGWYPTEVRKRNVTTALKAYAAF 597
++ GD+IDI IPNR+I++RVS+ EL RR A K W P + R R V+ AL+AYAA
Sbjct: 541 IQAGDIIDIHIPNRSIAIRVSDAELEKRRQAMQALGPKAWKPVD-RDRQVSAALRAYAAM 599
Query: 598 ATSADRGAVRDLN 610
TSA RGAVRD++
Sbjct: 600 TTSAARGAVRDVS 612
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1250
Number of extensions: 40
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 616
Length adjustment: 37
Effective length of query: 575
Effective length of database: 579
Effective search space: 332925
Effective search space used: 332925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate AMB_RS12770 AMB_RS12770 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.18561.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18561.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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