Alignments for a candidate for hisC in Magnetospirillum magneticum AMB-1

Align histidinol-phosphate aminotransferase [EC:2.6.1.9] (characterized)
to candidate AMB_RS20110 AMB_RS20110 histidinol-phosphate aminotransferase

Query= reanno::azobra:AZOBR_RS20485
         (364 letters)



>FitnessBrowser__Magneto:AMB_RS20110
          Length = 363

 Score =  442 bits (1138), Expect = e-129
 Identities = 228/362 (62%), Positives = 274/362 (75%), Gaps = 7/362 (1%)

Query: 8   PAPRPGILDIAPYVGGEHAGH-----IRLASNEGALGPSPRAVEAYRAAAGELHRYPDGG 62
           PAPRPGI+DI PYVGGE A       ++L+SNEGALGPSP+A+EA RA A E+HRYPDGG
Sbjct: 4   PAPRPGIMDIRPYVGGESAIEGVDRILKLSSNEGALGPSPKAMEALRAMAPEMHRYPDGG 63

Query: 63  SAKLRKAIAERFGLDADRVVCGAGSDELIALLIRAYAGPGDEVLYSQHGFLMYPIGAKSV 122
           +  LRKAI  RFGLDA R+VCGAGSDEL+ +L RAYAGPGDEVLYS HGFLMY I AK+ 
Sbjct: 64  AEDLRKAIGARFGLDASRIVCGAGSDELLGILCRAYAGPGDEVLYSAHGFLMYAIAAKAC 123

Query: 123 GATPVQAPETNLTTDVDSLLAHVTPRTRLVFVANPNNPTGTYITADEMARLHAGLPENAI 182
           GATPV APE +LT +VD+LLA VTPRT+++F+ANPNNPTGTY+ A E+ARL AGL  + +
Sbjct: 124 GATPVTAPEVDLTANVDNLLAAVTPRTKILFLANPNNPTGTYLPATEVARLRAGLRADIL 183

Query: 183 LVIDAAYAEYMNHNDYSAGQELVDRFPNVVMTRTFSKIFALGSVRLGWAYCPAGIADVLN 242
           LVIDAAY E+++ NDYS G ELV+   NVV+ RTFSK++ALG +RLGWAYCP  +A VLN
Sbjct: 184 LVIDAAYTEFVSRNDYSGGIELVEAGDNVVVCRTFSKMYALGGLRLGWAYCPENVAGVLN 243

Query: 243 RVRGPFNVSSAAQIAGVAALEDTAFLERSRSHNIEWREWFVQQVHGLGLKTHPSVTNFVL 302
           RVR PFNV + A  AG+AA  DTA+ E  +SHN  W  W   Q+  LGL   PSV NF+L
Sbjct: 244 RVRNPFNVGAPALAAGLAAFNDTAYAELCKSHNDYWLPWLSGQLAELGLTVVPSVCNFIL 303

Query: 303 VDFAGQTAGKDDAEAARLFLKGRGILVRQMPAYGLPSCLRVTIGTEAEMREVVQALKDFL 362
           V F  + AGK DA AA  FL+ +GI+VR M  YGL  CLR+TIGT  E + VV ALK+F+
Sbjct: 304 VRFP-KDAGK-DAGAADKFLRSKGIIVRAMGGYGLGDCLRITIGTGEENQLVVAALKEFV 361

Query: 363 AA 364
            A
Sbjct: 362 GA 363


Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 446
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 363
Length adjustment: 29
Effective length of query: 335
Effective length of database: 334
Effective search space:   111890
Effective search space used:   111890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate AMB_RS20110 AMB_RS20110 (histidinol-phosphate aminotransferase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.4143.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4143.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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